Initializing AMReX (26.06-11-g9ed35ab0e584)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.06-11-g9ed35ab0e584) initialized Starting run at 05:33:51 UTC on 2026-06-10. Successfully read inputs file ... Castro git describe: 26.06-5-g350b833bf AMReX git describe: 26.06-11-g9ed35ab0e Microphysics git describe: 26.06-5-g844166bc reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.014101737 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.326169503 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.315640783 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312424719 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.314061605 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.349108719 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.282073795 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.274368868 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.27380906 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.274349389 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.275817971 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.015957579 seconds Ending run at 05:33:55 UTC on 2026-06-10. Run time = 3.183413503 Run time without initialization = 3.016505634 Average number of zones advanced per microsecond: 0.869 Average number of zones advanced per microsecond per rank: 0.109 TinyProfiler total time across processes [min...avg...max]: 3.1788 ... 3.1818 ... 3.1835 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9767 2.0525 2.1301 66.91% Gravity::make_radial_gravity() 21 0.278 0.2846 0.3045 9.56% check_for_negative_density() 10 0.02473 0.102 0.1814 5.70% Castro::estTimeStep() 21 0.0273 0.05929 0.0999 3.14% Castro::initData() 1 0.0347 0.07111 0.09952 3.13% FabArray::ParallelCopy_finish() 41 0.03962 0.05691 0.09177 2.88% amrex::Copy() 193 0.0601 0.07709 0.08424 2.65% FabArray::setVal() 143 0.05503 0.06573 0.07234 2.27% Castro::reset_internal_energy(Fab) 1008 0.04083 0.04507 0.04669 1.47% FillPatchIterator::Initialize 41 0.03368 0.03922 0.04484 1.41% FabArray::ParallelCopy_nowait() 41 0.0273 0.03497 0.03813 1.20% StateData::FillBoundary(geom) 41 0.03063 0.03283 0.0353 1.11% Castro::normalize_species() 62 0.03343 0.03428 0.03516 1.10% Castro::initialize_do_advance() 10 0.01521 0.01925 0.02666 0.84% Gravity::interpolate_monopole_grav() 21 0.02457 0.025 0.02523 0.79% Castro::construct_new_gravity_source() 10 0.02239 0.02334 0.02509 0.79% Amr::writePlotFile() 2 0.007232 0.01848 0.02201 0.69% Castro::computeTemp() 63 0.01737 0.01835 0.01878 0.59% FabArray::Saxpy() 20 0.01091 0.01272 0.01372 0.43% Castro::initialize_advance() 10 0.005219 0.0101 0.013 0.41% FabArray::setDomainBndry() 41 0.008085 0.01068 0.01251 0.39% MultiFab::contains_nan() 20 0.009521 0.0104 0.01125 0.35% VisMF::Write(FabArray) 2 0.006822 0.008146 0.01095 0.34% Castro::construct_old_gravity_source() 10 0.007151 0.009772 0.01076 0.34% Amr::coarseTimeStep() 10 0.003845 0.007814 0.01067 0.34% Castro::initMFs() 1 0.006028 0.007317 0.01026 0.32% UtilCreateCleanDirectory() 2 5.31e-07 0.001165 0.009314 0.29% Castro::finalize_do_advance() 10 0.001104 0.004197 0.008171 0.26% StateData::define() 4 0.004957 0.006022 0.008026 0.25% Castro::construct_new_source() 50 0.00579 0.006159 0.006417 0.20% Gravity::get_new_grav_vector() 11 0.002869 0.003799 0.004347 0.14% Gravity::get_old_grav_vector() 10 0.001635 0.002452 0.002803 0.09% main() 1 0.001777 0.001988 0.002293 0.07% AmrLevel::FillPatch() 41 0.0007847 0.001038 0.001236 0.04% Amr::timeStep() 10 0.0001224 0.0001733 0.0003774 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002435 0.0002561 0.0002928 0.01% Castro::do_advance_ctu() 10 0.0001334 0.0001607 0.0001882 0.01% Castro::clean_state() 62 0.0001246 0.000143 0.0001527 0.00% FillPatchIterator::FillFromLevel0() 41 0.0001005 0.0001122 0.0001259 0.00% StateDataPhysBCFunct::() 41 9.587e-05 0.0001014 0.0001093 0.00% FabArray::ParallelCopy() 41 7.506e-05 8.937e-05 0.000101 0.00% Castro::do_old_sources() 10 6.923e-05 8.737e-05 9.949e-05 0.00% Castro::construct_old_source() 50 5.521e-05 7.709e-05 9.062e-05 0.00% Amr::FinalizeInit() 1 3.565e-06 1.473e-05 8.794e-05 0.00% Castro::Castro() 1 4.793e-05 7.241e-05 8.776e-05 0.00% Castro::do_new_sources() 10 4.835e-05 6.243e-05 8.074e-05 0.00% FillPatchSingleLevel 41 6.148e-05 6.785e-05 7.349e-05 0.00% Castro::subcycle_advance_ctu() 10 4.318e-05 5.31e-05 7.289e-05 0.00% Amr::defBaseLevel() 1 3.407e-05 4.522e-05 7.101e-05 0.00% Castro::apply_source_to_state() 20 3.998e-05 5.529e-05 6.488e-05 0.00% Castro::construct_old_gravity() 10 3.493e-05 4.202e-05 4.877e-05 0.00% Castro::advance() 10 3.53e-05 3.948e-05 4.843e-05 0.00% Castro::construct_new_gravity() 10 2.849e-05 3.491e-05 4.113e-05 0.00% Castro::check_for_nan() 20 2.179e-05 2.476e-05 2.765e-05 0.00% Castro::expand_state() 10 1.95e-05 2.21e-05 2.665e-05 0.00% Castro::post_timestep() 10 1.538e-05 1.674e-05 1.851e-05 0.00% AmrLevel::AmrLevel(dm) 1 5.85e-06 9.109e-06 1.524e-05 0.00% Castro::computeNewDt() 9 7.512e-06 9.482e-06 1.138e-05 0.00% Castro::post_init() 1 2.339e-06 4.483e-06 9.598e-06 0.00% Castro::computeInitialDt() 2 5.409e-06 7.071e-06 8.719e-06 0.00% Amr::InitializeInit() 1 2.392e-06 3.629e-06 6.458e-06 0.00% Amr::init() 1 1.89e-06 2.305e-06 2.635e-06 0.00% Amr::initialInit() 1 1.357e-06 1.72e-06 2.32e-06 0.00% Other 258 0.01128 0.01618 0.02035 0.64% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.179 3.182 3.183 100.00% Amr::coarseTimeStep() 10 2.998 2.998 2.998 94.19% Amr::timeStep() 10 2.976 2.979 2.983 93.70% Castro::advance() 10 2.962 2.965 2.968 93.24% Castro::subcycle_advance_ctu() 10 2.892 2.896 2.908 91.33% Castro::do_advance_ctu() 10 2.892 2.896 2.907 91.33% Castro::construct_ctu_hydro_source() 10 2.171 2.173 2.177 68.38% Gravity::make_radial_gravity() 21 0.2955 0.3014 0.3168 9.95% AmrLevel::FillPatch() 41 0.1928 0.2059 0.216 6.79% Gravity::get_new_grav_vector() 11 0.2038 0.2045 0.2066 6.49% Castro::construct_old_gravity() 10 0.176 0.1813 0.1933 6.07% FillPatchIterator::Initialize 41 0.1604 0.1751 0.1927 6.05% Gravity::get_old_grav_vector() 10 0.1753 0.1806 0.1927 6.05% Castro::construct_new_gravity() 10 0.1792 0.1803 0.1818 5.71% check_for_negative_density() 10 0.02473 0.102 0.1814 5.70% Castro::initialize_do_advance() 10 0.1613 0.1666 0.1725 5.42% Amr::init() 1 0.162 0.165 0.1666 5.23% Amr::initialInit() 1 0.1477 0.1507 0.1524 4.79% FillPatchIterator::FillFromLevel0() 41 0.1059 0.1252 0.1509 4.74% FillPatchSingleLevel 41 0.1058 0.1251 0.1508 4.74% Amr::InitializeInit() 1 0.05778 0.09468 0.1225 3.85% Amr::defBaseLevel() 1 0.05777 0.09468 0.1225 3.85% Castro::expand_state() 10 0.1043 0.1138 0.1201 3.77% FabArray::ParallelCopy() 41 0.07316 0.09207 0.1193 3.75% Castro::clean_state() 62 0.09849 0.1036 0.1054 3.31% Castro::initData() 1 0.03813 0.07461 0.1028 3.23% Castro::estTimeStep() 21 0.0273 0.05929 0.0999 3.14% Castro::do_old_sources() 10 0.09128 0.09449 0.099 3.11% Amr::FinalizeInit() 1 0.02796 0.05605 0.09422 2.96% FabArray::ParallelCopy_finish() 41 0.03962 0.05691 0.09177 2.88% amrex::Copy() 193 0.0601 0.07709 0.08424 2.65% FabArray::setVal() 143 0.05503 0.06573 0.07234 2.27% Castro::initialize_advance() 10 0.05356 0.06629 0.07022 2.21% Castro::computeInitialDt() 2 0.002584 0.03053 0.06866 2.16% Castro::do_new_sources() 10 0.05737 0.06124 0.06707 2.11% Castro::computeTemp() 63 0.05846 0.06368 0.06548 2.06% Castro::reset_internal_energy(MultiFab) 63 0.04109 0.04532 0.04694 1.47% Castro::reset_internal_energy(Fab) 1008 0.04083 0.04507 0.04669 1.47% FabArray::ParallelCopy_nowait() 41 0.0274 0.03507 0.03822 1.20% StateDataPhysBCFunct::() 41 0.03074 0.03293 0.0354 1.11% StateData::FillBoundary(geom) 41 0.03063 0.03283 0.0353 1.11% Castro::normalize_species() 62 0.03343 0.03428 0.03516 1.10% Castro::construct_new_source() 50 0.02841 0.0295 0.03143 0.99% Amr::writePlotFile() 2 0.03008 0.03036 0.03062 0.96% Castro::finalize_do_advance() 10 0.01863 0.02291 0.0264 0.83% Castro::post_init() 1 0.02529 0.02545 0.02569 0.81% Gravity::interpolate_monopole_grav() 21 0.02457 0.025 0.02523 0.79% Castro::construct_new_gravity_source() 10 0.02239 0.02334 0.02509 0.79% Castro::post_timestep() 10 0.01332 0.01408 0.01453 0.46% Castro::Castro() 1 0.009336 0.01096 0.01449 0.46% Castro::apply_source_to_state() 20 0.01095 0.01277 0.01378 0.43% FabArray::Saxpy() 20 0.01091 0.01272 0.01372 0.43% FabArray::setDomainBndry() 41 0.008085 0.01068 0.01251 0.39% Castro::check_for_nan() 20 0.009549 0.01043 0.01128 0.35% MultiFab::contains_nan() 20 0.009521 0.0104 0.01125 0.35% VisMF::Write(FabArray) 2 0.006822 0.008146 0.01095 0.34% Castro::construct_old_source() 50 0.007206 0.009849 0.01084 0.34% Castro::construct_old_gravity_source() 10 0.007151 0.009772 0.01076 0.34% Castro::initMFs() 1 0.006028 0.007317 0.01026 0.32% Castro::computeNewDt() 9 0.01005 0.01007 0.01008 0.32% UtilCreateCleanDirectory() 2 5.31e-07 0.001165 0.009314 0.29% AmrLevel::AmrLevel(dm) 1 0.004964 0.006031 0.008038 0.25% StateData::define() 4 0.004957 0.006022 0.008026 0.25% Other 258 0.01491 0.02342 0.02952 0.93% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8639 KiB 8646 KiB 8651 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6746 KiB 6753 KiB 6757 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7113 KiB 7121 KiB 7123 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4525 KiB 4531 KiB 4551 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 223 KiB 241 KiB 254 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 13 KiB 15 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2782 KiB 2788 KiB 2793 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 236 KiB 241 KiB 253 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 34 KiB 44 KiB 57 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2022 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 70 KiB 72 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.06-11-g9ed35ab0e584) finalized