Initializing AMReX (26.06-13-g87eac2327e9f)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.06-13-g87eac2327e9f) initialized Starting run at 05:17:23 UTC on 2026-06-16. Successfully read inputs file ... Castro git describe: 26.06-5-g350b833bf AMReX git describe: 26.06-13-g87eac2327 Microphysics git describe: 26.06-6-gd76fd209 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013863023 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.325576241 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.324132324 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.324051519 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.318211943 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.357214744 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.287533382 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.275032832 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.275999536 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.276833459 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.276768574 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.006891936 seconds Ending run at 05:17:26 UTC on 2026-06-16. Run time = 3.230633155 Run time without initialization = 3.050873501 Average number of zones advanced per microsecond: 0.859 Average number of zones advanced per microsecond per rank: 0.107 TinyProfiler total time across processes [min...avg...max]: 3.2270 ... 3.2295 ... 3.2307 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9982 2.0574 2.1299 65.93% Gravity::make_radial_gravity() 21 0.2831 0.289 0.3005 9.30% check_for_negative_density() 10 0.04304 0.1186 0.1818 5.63% Castro::estTimeStep() 21 0.02624 0.07559 0.1148 3.55% Castro::initData() 1 0.03535 0.07105 0.1105 3.42% FabArray::ParallelCopy_finish() 41 0.04363 0.06203 0.09177 2.84% amrex::Copy() 193 0.06468 0.08012 0.08706 2.69% FabArray::setVal() 143 0.05626 0.06613 0.07202 2.23% Castro::reset_internal_energy(Fab) 1008 0.04418 0.04592 0.04719 1.46% FillPatchIterator::Initialize 41 0.03662 0.04065 0.04565 1.41% FabArray::ParallelCopy_nowait() 41 0.02732 0.03473 0.03808 1.18% Castro::normalize_species() 62 0.03376 0.03437 0.03516 1.09% StateData::FillBoundary(geom) 41 0.03131 0.03297 0.03449 1.07% Castro::initialize_do_advance() 10 0.01694 0.02057 0.02811 0.87% Gravity::interpolate_monopole_grav() 21 0.02487 0.02511 0.02563 0.79% Castro::construct_new_gravity_source() 10 0.02211 0.02317 0.02473 0.77% FabArray::Saxpy() 20 0.0104 0.01358 0.0209 0.65% Castro::computeTemp() 63 0.01799 0.01856 0.01891 0.59% Castro::initialize_advance() 10 0.005353 0.01006 0.01325 0.41% Amr::writePlotFile() 2 0.007244 0.01019 0.01274 0.39% Amr::coarseTimeStep() 10 0.004532 0.008818 0.01222 0.38% FabArray::setDomainBndry() 41 0.007744 0.01041 0.01144 0.35% MultiFab::contains_nan() 20 0.00968 0.01038 0.01133 0.35% VisMF::Write(FabArray) 2 0.006828 0.008278 0.01083 0.34% Castro::construct_old_gravity_source() 10 0.007099 0.00974 0.01058 0.33% Castro::initMFs() 1 0.006169 0.007444 0.01017 0.31% Castro::finalize_do_advance() 10 0.001135 0.00516 0.009603 0.30% StateData::define() 4 0.005223 0.006064 0.00826 0.26% Castro::construct_new_source() 50 0.005791 0.006111 0.006413 0.20% Gravity::get_new_grav_vector() 11 0.002792 0.003758 0.00425 0.13% Gravity::get_old_grav_vector() 10 0.002058 0.002647 0.002992 0.09% main() 1 0.001993 0.002033 0.002091 0.06% AmrLevel::FillPatch() 41 0.0008774 0.001183 0.001304 0.04% Amr::timeStep() 10 0.000133 0.0001898 0.0004492 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002477 0.0002593 0.0002885 0.01% Castro::do_advance_ctu() 10 0.0001475 0.00017 0.0002031 0.01% Castro::clean_state() 62 0.000141 0.0001558 0.0001806 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001034 0.0001167 0.0001317 0.00% StateDataPhysBCFunct::() 41 9.43e-05 0.0001067 0.0001161 0.00% Castro::do_old_sources() 10 7.874e-05 9.134e-05 0.0001048 0.00% Castro::construct_old_source() 50 5.513e-05 7.722e-05 0.0001047 0.00% Amr::FinalizeInit() 1 3.763e-06 1.749e-05 0.0001044 0.00% FabArray::ParallelCopy() 41 8.008e-05 8.881e-05 0.0001017 0.00% FillPatchSingleLevel 41 6.537e-05 7.398e-05 9.054e-05 0.00% Castro::Castro() 1 5.362e-05 7.371e-05 9.021e-05 0.00% Castro::apply_source_to_state() 20 5.059e-05 5.82e-05 7.594e-05 0.00% Castro::do_new_sources() 10 5.251e-05 6.313e-05 7.001e-05 0.00% Castro::subcycle_advance_ctu() 10 4.958e-05 5.434e-05 6.382e-05 0.00% Amr::defBaseLevel() 1 3.482e-05 4.07e-05 5.009e-05 0.00% Castro::construct_old_gravity() 10 3.739e-05 4.191e-05 4.587e-05 0.00% Castro::advance() 10 3.738e-05 4.186e-05 4.562e-05 0.00% Castro::construct_new_gravity() 10 2.869e-05 3.486e-05 4.217e-05 0.00% Castro::post_timestep() 10 1.557e-05 2.104e-05 3.506e-05 0.00% Castro::check_for_nan() 20 2.226e-05 2.594e-05 3.479e-05 0.00% Castro::computeNewDt() 9 8.468e-06 1.828e-05 3.033e-05 0.00% Castro::expand_state() 10 1.855e-05 2.259e-05 2.733e-05 0.00% AmrLevel::AmrLevel(dm) 1 5.998e-06 8.686e-06 1.419e-05 0.00% Castro::post_init() 1 3.036e-06 4.992e-06 1.096e-05 0.00% Castro::computeInitialDt() 2 6.449e-06 7.593e-06 8.407e-06 0.00% Amr::InitializeInit() 1 2.475e-06 3.58e-06 7.39e-06 0.00% Amr::init() 1 1.768e-06 2.462e-06 3.458e-06 0.00% Amr::initialInit() 1 1.414e-06 1.787e-06 2.298e-06 0.00% Other 260 0.01145 0.01577 0.01899 0.59% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.227 3.23 3.231 100.00% Amr::coarseTimeStep() 10 3.042 3.042 3.042 94.16% Amr::timeStep() 10 3.018 3.022 3.026 93.67% Castro::advance() 10 3.003 3.007 3.012 93.22% Castro::subcycle_advance_ctu() 10 2.934 2.938 2.951 91.34% Castro::do_advance_ctu() 10 2.934 2.938 2.951 91.34% Castro::construct_ctu_hydro_source() 10 2.193 2.195 2.199 68.07% Gravity::make_radial_gravity() 21 0.3011 0.307 0.3136 9.71% AmrLevel::FillPatch() 41 0.2039 0.214 0.2284 7.07% Gravity::get_new_grav_vector() 11 0.2036 0.2043 0.2049 6.34% FillPatchIterator::Initialize 41 0.1694 0.1813 0.2025 6.27% Castro::construct_old_gravity() 10 0.1844 0.1874 0.1921 5.95% Gravity::get_old_grav_vector() 10 0.1837 0.1867 0.1914 5.92% Castro::construct_new_gravity() 10 0.1822 0.1826 0.1831 5.67% check_for_negative_density() 10 0.04304 0.1186 0.1818 5.63% Amr::init() 1 0.1756 0.1782 0.1794 5.55% Castro::initialize_do_advance() 10 0.1686 0.1709 0.1779 5.51% Amr::initialInit() 1 0.1616 0.1641 0.1654 5.12% FillPatchIterator::FillFromLevel0() 41 0.1128 0.1302 0.1535 4.75% FillPatchSingleLevel 41 0.1127 0.1301 0.1534 4.75% Amr::InitializeInit() 1 0.05801 0.09436 0.136 4.21% Amr::defBaseLevel() 1 0.058 0.09436 0.136 4.21% Castro::expand_state() 10 0.1076 0.1166 0.1254 3.88% FabArray::ParallelCopy() 41 0.07902 0.09694 0.1193 3.69% Castro::estTimeStep() 21 0.02624 0.07559 0.1148 3.55% Castro::initData() 1 0.03874 0.07459 0.114 3.53% Castro::clean_state() 62 0.102 0.1048 0.1069 3.31% Amr::FinalizeInit() 1 0.02566 0.06973 0.1062 3.29% Castro::do_old_sources() 10 0.09693 0.1012 0.1044 3.23% FabArray::ParallelCopy_finish() 41 0.04363 0.06203 0.09177 2.84% amrex::Copy() 193 0.06468 0.08012 0.08706 2.69% Castro::computeInitialDt() 2 0.00244 0.04658 0.08301 2.57% FabArray::setVal() 143 0.05626 0.06613 0.07202 2.23% Castro::initialize_advance() 10 0.05487 0.06666 0.07159 2.22% Castro::computeTemp() 63 0.06242 0.06474 0.06634 2.05% Castro::do_new_sources() 10 0.05704 0.06105 0.06586 2.04% Castro::reset_internal_energy(MultiFab) 63 0.04443 0.04618 0.04744 1.47% Castro::reset_internal_energy(Fab) 1008 0.04418 0.04592 0.04719 1.46% FabArray::ParallelCopy_nowait() 41 0.02742 0.03482 0.03816 1.18% Castro::normalize_species() 62 0.03376 0.03437 0.03516 1.09% StateDataPhysBCFunct::() 41 0.0314 0.03307 0.03461 1.07% StateData::FillBoundary(geom) 41 0.03131 0.03297 0.03449 1.07% Castro::construct_new_source() 50 0.02816 0.02928 0.03105 0.96% Castro::finalize_do_advance() 10 0.01783 0.02404 0.02882 0.89% Gravity::interpolate_monopole_grav() 21 0.02487 0.02511 0.02563 0.79% Castro::construct_new_gravity_source() 10 0.02211 0.02317 0.02473 0.77% Castro::post_init() 1 0.02252 0.02294 0.02312 0.72% Amr::writePlotFile() 2 0.02096 0.02108 0.02145 0.66% Castro::apply_source_to_state() 20 0.01045 0.01364 0.02097 0.65% FabArray::Saxpy() 20 0.0104 0.01358 0.0209 0.65% Castro::post_timestep() 10 0.014 0.01435 0.01474 0.46% Castro::Castro() 1 0.009565 0.01105 0.01421 0.44% FabArray::setDomainBndry() 41 0.007744 0.01041 0.01144 0.35% Castro::check_for_nan() 20 0.009702 0.01041 0.01136 0.35% MultiFab::contains_nan() 20 0.00968 0.01038 0.01133 0.35% VisMF::Write(FabArray) 2 0.006828 0.008278 0.01083 0.34% Castro::construct_old_source() 50 0.007154 0.009818 0.01068 0.33% Castro::construct_old_gravity_source() 10 0.007099 0.00974 0.01058 0.33% Castro::initMFs() 1 0.006169 0.007444 0.01017 0.31% Castro::computeNewDt() 9 0.01013 0.01015 0.01016 0.31% AmrLevel::AmrLevel(dm) 1 0.005229 0.006072 0.00827 0.26% StateData::define() 4 0.005223 0.006064 0.00826 0.26% Other 260 0.01521 0.02251 0.02717 0.84% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 4 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8635 KiB 8648 KiB 8653 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6720 KiB 6730 KiB 6735 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7111 KiB 7123 KiB 7125 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4521 KiB 4528 KiB 4547 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 233 KiB 247 KiB 265 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2778 KiB 2786 KiB 2792 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 237 KiB 241 KiB 247 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 35 KiB 45 KiB 54 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2021 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 80 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 72 KiB 74 KiB 75 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.06-13-g87eac2327e9f) finalized