Initializing AMReX (26.07-51-g50c73c8ed200)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.07-51-g50c73c8ed200) initialized Starting run at 05:17:46 UTC on 2026-07-28. Successfully read inputs file ... Castro git describe: 26.07-8-ge56a6fc0b AMReX git describe: 26.07-51-g50c73c8ed Microphysics git describe: 26.07-3-g6beccff2 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013480289 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.326849546 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.318799571 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.316557504 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.316286089 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.356500007 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.288203574 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.276385459 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.27522371 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.273770348 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.274978373 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.006737085 seconds Ending run at 05:17:50 UTC on 2026-07-28. Run time = 3.201428726 Run time without initialization = 3.032857057 Average number of zones advanced per microsecond: 0.864 Average number of zones advanced per microsecond per rank: 0.108 TinyProfiler total time across processes [min...avg...max]: 3.1981 ... 3.2009 ... 3.2015 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9663 2.0610 2.1335 66.64% Gravity::make_radial_gravity() 21 0.2767 0.2842 0.2982 9.31% check_for_negative_density() 10 0.03772 0.1138 0.212 6.62% Castro::estTimeStep() 21 0.0249 0.07008 0.1065 3.33% Castro::initData() 1 0.03398 0.06787 0.1034 3.23% amrex::Copy() 193 0.06385 0.0794 0.08808 2.75% FabArray::ParallelCopy_finish() 41 0.04677 0.05468 0.08001 2.50% FabArray::setVal() 143 0.05584 0.06652 0.07324 2.29% Castro::reset_internal_energy(Fab) 1008 0.04427 0.04501 0.04608 1.44% FillPatchIterator::Initialize 41 0.03788 0.0398 0.04565 1.43% FabArray::ParallelCopy_nowait() 41 0.02624 0.03529 0.03803 1.19% StateData::FillBoundary(geom) 41 0.03166 0.03326 0.0365 1.14% Castro::normalize_species() 62 0.03407 0.0345 0.03545 1.11% Castro::initialize_do_advance() 10 0.01584 0.02032 0.02578 0.81% Gravity::interpolate_monopole_grav() 21 0.0246 0.02488 0.02525 0.79% Castro::construct_new_gravity_source() 10 0.02189 0.02307 0.02481 0.77% Castro::computeTemp() 63 0.01804 0.01836 0.01867 0.58% FabArray::Saxpy() 20 0.0105 0.01269 0.01406 0.44% Castro::initialize_advance() 10 0.005241 0.009938 0.0125 0.39% Amr::writePlotFile() 2 0.006895 0.009713 0.01208 0.38% FabArray::setDomainBndry() 41 0.007256 0.01063 0.01178 0.37% Amr::coarseTimeStep() 10 0.005357 0.008575 0.01165 0.36% MultiFab::contains_nan() 20 0.009055 0.01004 0.01086 0.34% Castro::construct_old_gravity_source() 10 0.006964 0.009683 0.01065 0.33% VisMF::Write(FabArray) 2 0.007025 0.008191 0.01058 0.33% Castro::initMFs() 1 0.006146 0.006584 0.009282 0.29% Castro::finalize_do_advance() 10 0.001013 0.004371 0.007913 0.25% StateData::define() 4 0.005013 0.005349 0.00677 0.21% Castro::construct_new_source() 50 0.005838 0.006111 0.006331 0.20% Gravity::get_new_grav_vector() 11 0.002817 0.003904 0.004398 0.14% Gravity::get_old_grav_vector() 10 0.001905 0.00264 0.003203 0.10% main() 1 0.001788 0.001972 0.00213 0.07% AmrLevel::FillPatch() 41 0.0008454 0.001018 0.001131 0.04% Amr::timeStep() 10 0.0001396 0.0001771 0.000343 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002473 0.000258 0.0002666 0.01% Castro::do_advance_ctu() 10 0.0001464 0.0001712 0.0001904 0.01% Castro::clean_state() 62 0.0001309 0.000147 0.000167 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001056 0.0001101 0.0001193 0.00% Castro::Castro() 1 5.865e-05 8.668e-05 0.0001189 0.00% StateDataPhysBCFunct::() 41 9.33e-05 0.0001016 0.0001083 0.00% FabArray::ParallelCopy() 41 7.414e-05 8.507e-05 0.0001006 0.00% Castro::do_old_sources() 10 8.138e-05 9.057e-05 9.934e-05 0.00% Castro::construct_old_source() 50 5.891e-05 7.603e-05 9.527e-05 0.00% FillPatchSingleLevel 41 6.158e-05 6.897e-05 7.873e-05 0.00% Amr::FinalizeInit() 1 3.917e-06 1.243e-05 6.832e-05 0.00% Castro::subcycle_advance_ctu() 10 3.951e-05 5.168e-05 6.601e-05 0.00% Castro::do_new_sources() 10 5.359e-05 6.044e-05 6.518e-05 0.00% Castro::apply_source_to_state() 20 4.699e-05 5.638e-05 6.425e-05 0.00% Amr::defBaseLevel() 1 3.401e-05 4.109e-05 5.028e-05 0.00% Castro::advance() 10 3.42e-05 3.886e-05 4.816e-05 0.00% Castro::construct_old_gravity() 10 3.52e-05 4.064e-05 4.665e-05 0.00% Castro::construct_new_gravity() 10 2.997e-05 3.575e-05 4.345e-05 0.00% Castro::check_for_nan() 20 2.398e-05 2.511e-05 2.695e-05 0.00% Castro::expand_state() 10 1.947e-05 2.416e-05 2.674e-05 0.00% Castro::post_timestep() 10 1.481e-05 1.756e-05 2.185e-05 0.00% AmrLevel::AmrLevel(dm) 1 1.058e-05 1.397e-05 2.078e-05 0.00% Castro::computeNewDt() 9 8.912e-06 9.461e-06 1.017e-05 0.00% Castro::computeInitialDt() 2 5.319e-06 6.522e-06 7.975e-06 0.00% Amr::InitializeInit() 1 2.555e-06 3.809e-06 5.193e-06 0.00% Castro::post_init() 1 2.357e-06 3.067e-06 3.637e-06 0.00% Amr::init() 1 1.935e-06 2.408e-06 3.278e-06 0.00% Amr::initialInit() 1 1.177e-06 1.725e-06 2.322e-06 0.00% Other 260 0.01123 0.01556 0.01734 0.54% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.198 3.201 3.201 100.00% Amr::coarseTimeStep() 10 3.024 3.024 3.024 94.46% Amr::timeStep() 10 3.001 3.004 3.008 93.94% Castro::advance() 10 2.986 2.99 2.993 93.49% Castro::subcycle_advance_ctu() 10 2.918 2.922 2.938 91.76% Castro::do_advance_ctu() 10 2.918 2.922 2.938 91.76% Castro::construct_ctu_hydro_source() 10 2.19 2.194 2.198 68.67% Gravity::make_radial_gravity() 21 0.2948 0.3024 0.3117 9.74% AmrLevel::FillPatch() 41 0.1965 0.2059 0.2123 6.63% check_for_negative_density() 10 0.03772 0.1138 0.212 6.62% Gravity::get_new_grav_vector() 11 0.2027 0.2032 0.2039 6.37% Castro::construct_old_gravity() 10 0.1794 0.184 0.1903 5.94% Gravity::get_old_grav_vector() 10 0.1787 0.1833 0.1897 5.92% FillPatchIterator::Initialize 41 0.1659 0.1741 0.187 5.84% Castro::construct_new_gravity() 10 0.1812 0.1819 0.1828 5.71% Castro::initialize_do_advance() 10 0.1596 0.1666 0.172 5.37% Amr::init() 1 0.1648 0.1677 0.1681 5.25% Amr::initialInit() 1 0.1511 0.154 0.1545 4.83% FillPatchIterator::FillFromLevel0() 41 0.1177 0.1237 0.1384 4.32% FillPatchSingleLevel 41 0.1176 0.1236 0.1383 4.32% Amr::InitializeInit() 1 0.05678 0.09061 0.1258 3.93% Amr::defBaseLevel() 1 0.05677 0.09061 0.1258 3.93% Castro::expand_state() 10 0.1076 0.1133 0.1165 3.64% Castro::initData() 1 0.03763 0.07153 0.1065 3.33% Castro::estTimeStep() 21 0.0249 0.07008 0.1065 3.33% FabArray::ParallelCopy() 41 0.08237 0.09015 0.1064 3.32% Castro::clean_state() 62 0.1024 0.1037 0.1048 3.27% Amr::FinalizeInit() 1 0.02531 0.06334 0.09777 3.05% Castro::do_old_sources() 10 0.09224 0.09484 0.09758 3.05% amrex::Copy() 193 0.06385 0.0794 0.08808 2.75% FabArray::ParallelCopy_finish() 41 0.04677 0.05468 0.08001 2.50% Castro::computeInitialDt() 2 0.002404 0.0405 0.0748 2.34% FabArray::setVal() 143 0.05584 0.06652 0.07324 2.29% Castro::initialize_advance() 10 0.0531 0.06548 0.06933 2.17% Castro::do_new_sources() 10 0.0563 0.061 0.06753 2.11% Castro::computeTemp() 63 0.06257 0.06363 0.06489 2.03% Castro::reset_internal_energy(MultiFab) 63 0.04453 0.04527 0.04634 1.45% Castro::reset_internal_energy(Fab) 1008 0.04427 0.04501 0.04608 1.44% FabArray::ParallelCopy_nowait() 41 0.02633 0.03538 0.03813 1.19% StateDataPhysBCFunct::() 41 0.03176 0.03336 0.03661 1.14% StateData::FillBoundary(geom) 41 0.03166 0.03326 0.0365 1.14% Castro::normalize_species() 62 0.03407 0.0345 0.03545 1.11% Castro::finalize_do_advance() 10 0.01671 0.02397 0.03225 1.01% Castro::construct_new_source() 50 0.02772 0.02918 0.03101 0.97% Gravity::interpolate_monopole_grav() 21 0.0246 0.02488 0.02525 0.79% Castro::construct_new_gravity_source() 10 0.02189 0.02307 0.02481 0.77% Castro::post_init() 1 0.02217 0.02256 0.0228 0.71% Amr::writePlotFile() 2 0.02043 0.02056 0.02092 0.65% Castro::post_timestep() 10 0.01399 0.01429 0.0147 0.46% Castro::apply_source_to_state() 20 0.01055 0.01274 0.01412 0.44% FabArray::Saxpy() 20 0.0105 0.01269 0.01406 0.44% Castro::Castro() 1 0.0102 0.01073 0.01241 0.39% FabArray::setDomainBndry() 41 0.007256 0.01063 0.01178 0.37% Castro::check_for_nan() 20 0.00908 0.01006 0.01088 0.34% MultiFab::contains_nan() 20 0.009055 0.01004 0.01086 0.34% Castro::construct_old_source() 50 0.007023 0.009759 0.01073 0.34% Castro::construct_old_gravity_source() 10 0.006964 0.009683 0.01065 0.33% VisMF::Write(FabArray) 2 0.007025 0.008191 0.01058 0.33% Castro::computeNewDt() 9 0.00998 0.01 0.01003 0.31% Castro::initMFs() 1 0.006146 0.006584 0.009282 0.29% AmrLevel::AmrLevel(dm) 1 0.005027 0.005363 0.006791 0.21% StateData::define() 4 0.005013 0.005349 0.00677 0.21% Other 260 0.01491 0.02254 0.02546 0.80% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 2 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8643 KiB 8652 KiB 8655 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6745 KiB 6752 KiB 6756 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7116 KiB 7124 KiB 7127 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4540 KiB 4546 KiB 4565 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 228 KiB 240 KiB 246 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 13 KiB 15 KiB 19 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2789 KiB 2796 KiB 2799 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 234 KiB 240 KiB 248 KiB 2560 KiB 2560 KiB 2560 KiB FabArray::ParallelCopy_nowait() 656 37 KiB 43 KiB 48 KiB 2170 KiB 2170 KiB 2170 KiB Castro::buildMetrics() 32 2023 KiB 2025 KiB 2026 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 81 KiB 81 KiB 81 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 71 KiB 73 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.07-51-g50c73c8ed200) finalized