Initializing AMReX (26.11-5-g1d9bd90c3583)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.11-5-g1d9bd90c3583) initialized Starting run at 06:34:20 UTC on 2026-11-03. Successfully read inputs file ... Castro git describe: 26.11-1-gca4aa8eac AMReX git describe: 26.11-5-g1d9bd90c3 Microphysics git describe: 26.11-2-gf0d41297 reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013336009 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.32172262 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.304703945 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.305739659 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.3056392 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.34841976 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.277516894 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.264361876 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.261472703 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.264537805 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.264458812 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007256917 seconds Ending run at 06:34:23 UTC on 2026-11-03. Run time = 3.094275833 Run time without initialization = 2.928221372 Average number of zones advanced per microsecond: 0.895 Average number of zones advanced per microsecond per rank: 0.112 TinyProfiler total time across processes [min...avg...max]: 3.0914 ... 3.0936 ... 3.0943 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.8716 1.9539 2.0313 65.65% Gravity::make_radial_gravity() 21 0.277 0.2842 0.295 9.53% check_for_negative_density() 10 0.03423 0.1142 0.2015 6.51% Castro::estTimeStep() 21 0.03391 0.06516 0.1094 3.54% Castro::initData() 1 0.03285 0.07038 0.1017 3.29% amrex::Copy() 193 0.06425 0.07992 0.08765 2.83% FabArray::setVal() 143 0.06178 0.06663 0.07184 2.32% FabArray::ParallelCopy_finish() 41 0.04215 0.05679 0.07113 2.30% FillPatchIterator::Initialize 41 0.03701 0.03979 0.04856 1.57% Castro::reset_internal_energy(Fab) 1008 0.03929 0.04503 0.04693 1.52% FabArray::ParallelCopy_nowait() 41 0.02664 0.03576 0.03854 1.25% StateData::FillBoundary(geom) 41 0.03 0.0332 0.03572 1.15% Castro::normalize_species() 62 0.03223 0.03293 0.03353 1.08% Castro::initialize_do_advance() 10 0.01432 0.01848 0.02838 0.92% Gravity::interpolate_monopole_grav() 21 0.02408 0.02479 0.02513 0.81% Castro::construct_new_gravity_source() 10 0.02234 0.02353 0.02474 0.80% Castro::computeTemp() 63 0.01671 0.01832 0.0191 0.62% FabArray::Saxpy() 20 0.01059 0.01258 0.01384 0.45% Amr::writePlotFile() 2 0.0087 0.01074 0.0132 0.43% Castro::initialize_advance() 10 0.005245 0.01015 0.013 0.42% MultiFab::contains_nan() 20 0.01028 0.01123 0.01292 0.42% FabArray::setDomainBndry() 41 0.007739 0.01099 0.01239 0.40% Amr::coarseTimeStep() 10 0.003049 0.009395 0.01222 0.39% Castro::construct_old_gravity_source() 10 0.007108 0.009738 0.01064 0.34% VisMF::Write(FabArray) 2 0.006249 0.007611 0.009489 0.31% Castro::finalize_do_advance() 10 0.001162 0.002948 0.009163 0.30% Castro::initMFs() 1 0.006062 0.006847 0.008345 0.27% Castro::construct_new_source() 50 0.00575 0.006219 0.007435 0.24% StateData::define() 4 0.00495 0.005691 0.007407 0.24% Gravity::get_new_grav_vector() 11 0.002792 0.003503 0.003922 0.13% Gravity::get_old_grav_vector() 10 0.002416 0.003 0.003484 0.11% main() 1 0.001856 0.001921 0.001991 0.06% AmrLevel::FillPatch() 41 0.0009428 0.001014 0.001146 0.04% Amr::timeStep() 10 0.0001326 0.0001816 0.0003388 0.01% Castro::reset_internal_energy(MultiFab) 63 0.0002315 0.0002455 0.0002719 0.01% Castro::do_advance_ctu() 10 0.000135 0.0001721 0.0002135 0.01% Castro::clean_state() 62 0.0001366 0.0001435 0.0001541 0.00% FillPatchIterator::FillFromLevel0() 41 9.863e-05 0.0001129 0.000152 0.00% StateDataPhysBCFunct::() 41 9.09e-05 0.000101 0.0001124 0.00% Castro::do_old_sources() 10 6.586e-05 9.091e-05 0.0001083 0.00% FabArray::ParallelCopy() 41 7.542e-05 8.689e-05 9.899e-05 0.00% Castro::Castro() 1 5.082e-05 6.559e-05 8.862e-05 0.00% Castro::construct_old_source() 50 4.669e-05 7.031e-05 8.195e-05 0.00% FillPatchSingleLevel 41 6.062e-05 7.179e-05 8.155e-05 0.00% Amr::FinalizeInit() 1 4.267e-06 1.332e-05 7.395e-05 0.00% Castro::do_new_sources() 10 4.7e-05 5.994e-05 7.258e-05 0.00% Castro::subcycle_advance_ctu() 10 4.428e-05 5.385e-05 6.622e-05 0.00% Castro::advance() 10 4.302e-05 5.53e-05 6.493e-05 0.00% Castro::apply_source_to_state() 20 4.006e-05 4.997e-05 6.252e-05 0.00% Amr::defBaseLevel() 1 2.838e-05 3.849e-05 5.988e-05 0.00% Castro::construct_old_gravity() 10 3.192e-05 3.744e-05 4.656e-05 0.00% Castro::construct_new_gravity() 10 2.657e-05 3.544e-05 4.208e-05 0.00% Castro::check_for_nan() 20 2.193e-05 2.433e-05 2.718e-05 0.00% Castro::expand_state() 10 2.09e-05 2.267e-05 2.548e-05 0.00% Castro::post_timestep() 10 1.396e-05 1.677e-05 1.998e-05 0.00% AmrLevel::AmrLevel(dm) 1 8.736e-06 1.088e-05 1.4e-05 0.00% Castro::computeNewDt() 9 8.654e-06 9.82e-06 1.131e-05 0.00% Castro::post_init() 1 2.295e-06 5.04e-06 9.623e-06 0.00% Castro::computeInitialDt() 2 5.309e-06 6.938e-06 8.246e-06 0.00% Amr::InitializeInit() 1 3.076e-06 4.2e-06 6.771e-06 0.00% Amr::init() 1 1.886e-06 2.297e-06 3.363e-06 0.00% Amr::initialInit() 1 1.526e-06 1.723e-06 2.009e-06 0.00% Other 260 0.01125 0.01521 0.01747 0.56% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.091 3.094 3.094 100.00% Amr::coarseTimeStep() 10 2.919 2.919 2.919 94.34% Amr::timeStep() 10 2.897 2.899 2.906 93.90% Castro::advance() 10 2.883 2.885 2.891 93.44% Castro::subcycle_advance_ctu() 10 2.811 2.816 2.83 91.47% Castro::do_advance_ctu() 10 2.811 2.816 2.83 91.47% Castro::construct_ctu_hydro_source() 10 2.085 2.087 2.093 67.63% Gravity::make_radial_gravity() 21 0.2944 0.3023 0.3087 9.98% AmrLevel::FillPatch() 41 0.1967 0.2091 0.2185 7.06% Gravity::get_new_grav_vector() 11 0.2025 0.2043 0.206 6.66% check_for_negative_density() 10 0.03423 0.1142 0.2015 6.51% Castro::construct_old_gravity() 10 0.1777 0.1829 0.187 6.04% FillPatchIterator::Initialize 41 0.1663 0.177 0.1866 6.03% Gravity::get_old_grav_vector() 10 0.1768 0.1822 0.1863 6.02% Castro::construct_new_gravity() 10 0.1814 0.1828 0.1843 5.96% Castro::initialize_do_advance() 10 0.1617 0.1674 0.1706 5.51% Amr::init() 1 0.1627 0.1649 0.1657 5.35% Amr::initialInit() 1 0.1491 0.1513 0.1522 4.92% FillPatchIterator::FillFromLevel0() 41 0.1064 0.1262 0.1372 4.43% FillPatchSingleLevel 41 0.1063 0.1261 0.137 4.43% Amr::InitializeInit() 1 0.05342 0.09229 0.1239 4.00% Amr::defBaseLevel() 1 0.05342 0.09228 0.1239 4.00% Castro::expand_state() 10 0.1059 0.1156 0.1207 3.90% Castro::estTimeStep() 21 0.03391 0.06516 0.1094 3.54% Castro::clean_state() 62 0.0946 0.1022 0.1054 3.41% Castro::initData() 1 0.03624 0.0739 0.1047 3.38% FabArray::ParallelCopy() 41 0.07614 0.09273 0.1012 3.27% Amr::FinalizeInit() 1 0.02518 0.05905 0.09871 3.19% Castro::do_old_sources() 10 0.09321 0.09512 0.09753 3.15% amrex::Copy() 193 0.06425 0.07992 0.08765 2.83% Castro::computeInitialDt() 2 0.002226 0.03608 0.07571 2.45% FabArray::setVal() 143 0.06178 0.06663 0.07184 2.32% FabArray::ParallelCopy_finish() 41 0.04215 0.05679 0.07113 2.30% Castro::initialize_advance() 10 0.05821 0.06641 0.06961 2.25% Castro::do_new_sources() 10 0.05738 0.06177 0.06795 2.20% Castro::computeTemp() 63 0.05624 0.06359 0.06627 2.14% Castro::reset_internal_energy(MultiFab) 63 0.03952 0.04528 0.04718 1.52% Castro::reset_internal_energy(Fab) 1008 0.03929 0.04503 0.04693 1.52% FabArray::ParallelCopy_nowait() 41 0.02675 0.03585 0.03865 1.25% StateDataPhysBCFunct::() 41 0.03009 0.0333 0.03583 1.16% StateData::FillBoundary(geom) 41 0.03 0.0332 0.03572 1.15% Castro::normalize_species() 62 0.03223 0.03293 0.03353 1.08% Castro::finalize_do_advance() 10 0.01428 0.02286 0.03258 1.05% Castro::construct_new_source() 50 0.02841 0.02975 0.03218 1.04% Gravity::interpolate_monopole_grav() 21 0.02408 0.02479 0.02513 0.81% Castro::construct_new_gravity_source() 10 0.02234 0.02353 0.02474 0.80% Castro::post_init() 1 0.02251 0.02276 0.02282 0.74% Amr::writePlotFile() 2 0.02081 0.02092 0.02135 0.69% Castro::post_timestep() 10 0.01299 0.01394 0.01423 0.46% Castro::apply_source_to_state() 20 0.01063 0.01263 0.0139 0.45% FabArray::Saxpy() 20 0.01059 0.01258 0.01384 0.45% Castro::check_for_nan() 20 0.0103 0.01125 0.01294 0.42% MultiFab::contains_nan() 20 0.01028 0.01123 0.01292 0.42% FabArray::setDomainBndry() 41 0.007739 0.01099 0.01239 0.40% Castro::Castro() 1 0.009141 0.01036 0.01165 0.38% Castro::construct_old_source() 50 0.007155 0.009809 0.01072 0.35% Castro::construct_old_gravity_source() 10 0.007108 0.009738 0.01064 0.34% VisMF::Write(FabArray) 2 0.006249 0.007611 0.009489 0.31% Castro::computeNewDt() 9 0.009171 0.009183 0.0092 0.30% Castro::initMFs() 1 0.006062 0.006847 0.008345 0.27% AmrLevel::AmrLevel(dm) 1 0.004962 0.005702 0.007421 0.24% StateData::define() 4 0.00495 0.005691 0.007407 0.24% Other 260 0.01498 0.02175 0.02508 0.81% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Comms Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- The_Comms_Arena::Initialize() 8 1 B 1 B 1 B 8192 KiB 8192 KiB 8192 KiB FabArray::ParallelCopy_nowait() 656 34 KiB 45 KiB 50 KiB 2170 KiB 2170 KiB 2170 KiB --------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8638 KiB 8649 KiB 8654 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6737 KiB 6744 KiB 6749 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7115 KiB 7123 KiB 7126 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4529 KiB 4534 KiB 4548 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 235 KiB 252 KiB 264 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 12 KiB 15 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2790 KiB 2791 KiB 2798 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 242 KiB 248 KiB 254 KiB 2560 KiB 2560 KiB 2560 KiB Castro::buildMetrics() 32 2022 KiB 2025 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 83 KiB 84 KiB 85 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 73 KiB 75 KiB 77 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.11-5-g1d9bd90c3583) finalized