Initializing AMReX (26.11-18-g21e455c381db)... MPI initialized with 8 MPI processes MPI initialized with thread support level 3 AMReX (26.11-18-g21e455c381db) initialized Starting run at 00:30:02 UTC on 2026-11-08. Successfully read inputs file ... Castro git describe: 26.11-3-gc2ea243c8 AMReX git describe: 26.11-18-g21e455c38 Microphysics git describe: 26.11-3-g6480e00f reading extern runtime parameters ... 3 Species: C12 O16 Mg24 Successfully read inputs file ... INITIAL GRIDS Level 0 8 grids 262144 cells 100 % of domain smallest grid: 32 x 32 x 32 biggest grid: 32 x 32 x 32 PLOTFILE: file = dustcollapse-3d-monopole_plt00000 Write plotfile time = 0.013087887 seconds [Level 0 step 1] ADVANCE at time 0 with dt = 4.541742215e-05 [Level 0 step 1] Advanced 262144 cells STEP = 1 TIME = 4.541742215e-05 DT = 4.541742215e-05 [STEP 1] Coarse TimeStep time: 0.309223379 [STEP 1] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 2] ADVANCE at time 4.541742215e-05 with dt = 4.768829326e-05 [Level 0 step 2] Advanced 262144 cells STEP = 2 TIME = 9.31057154e-05 DT = 4.768829326e-05 [STEP 2] Coarse TimeStep time: 0.316874909 [STEP 2] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 3] ADVANCE at time 9.31057154e-05 with dt = 5.007270792e-05 [Level 0 step 3] Advanced 262144 cells STEP = 3 TIME = 0.0001431784233 DT = 5.007270792e-05 [STEP 3] Coarse TimeStep time: 0.312737303 [STEP 3] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 4] ADVANCE at time 0.0001431784233 with dt = 5.257634331e-05 [Level 0 step 4] Advanced 262144 cells STEP = 4 TIME = 0.0001957547666 DT = 5.257634331e-05 [STEP 4] Coarse TimeStep time: 0.3121165 [STEP 4] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 5] ADVANCE at time 0.0001957547666 with dt = 5.520516048e-05 [Level 0 step 5] Advanced 262144 cells STEP = 5 TIME = 0.0002509599271 DT = 5.520516048e-05 [STEP 5] Coarse TimeStep time: 0.361826766 [STEP 5] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 6] ADVANCE at time 0.0002509599271 with dt = 5.79654185e-05 [Level 0 step 6] Advanced 262144 cells STEP = 6 TIME = 0.0003089253456 DT = 5.79654185e-05 [STEP 6] Coarse TimeStep time: 0.290779995 [STEP 6] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 7] ADVANCE at time 0.0003089253456 with dt = 6.086368943e-05 [Level 0 step 7] Advanced 262144 cells STEP = 7 TIME = 0.000369789035 DT = 6.086368943e-05 [STEP 7] Coarse TimeStep time: 0.272141547 [STEP 7] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 8] ADVANCE at time 0.000369789035 with dt = 6.39068739e-05 [Level 0 step 8] Advanced 262144 cells STEP = 8 TIME = 0.000433695909 DT = 6.39068739e-05 [STEP 8] Coarse TimeStep time: 0.270203826 [STEP 8] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 9] ADVANCE at time 0.000433695909 with dt = 6.71022176e-05 [Level 0 step 9] Advanced 262144 cells STEP = 9 TIME = 0.0005007981265 DT = 6.71022176e-05 [STEP 9] Coarse TimeStep time: 0.273099649 [STEP 9] FAB kilobyte spread across MPI nodes: [57998 ... 57998] [Level 0 step 10] ADVANCE at time 0.0005007981265 with dt = 7.045732848e-05 [Level 0 step 10] Advanced 262144 cells STEP = 10 TIME = 0.000571255455 DT = 7.045732848e-05 [STEP 10] Coarse TimeStep time: 0.27374198 [STEP 10] FAB kilobyte spread across MPI nodes: [57998 ... 57998] PLOTFILE: file = dustcollapse-3d-monopole_plt00010 Write plotfile time = 0.007389793 seconds Ending run at 00:30:05 UTC on 2026-11-08. Run time = 3.169735896 Run time without initialization = 3.002597889 Average number of zones advanced per microsecond: 0.873 Average number of zones advanced per microsecond per rank: 0.109 TinyProfiler total time across processes [min...avg...max]: 3.1655 ... 3.1683 ... 3.1700 ------------------------------------------------------------------------------------------- Name NCalls Excl. Min Excl. Avg Excl. Max Max % ------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 10 1.9267 2.0168 2.1243 67.01% Gravity::make_radial_gravity() 21 0.279 0.2879 0.3001 9.47% check_for_negative_density() 10 0.009351 0.1223 0.2143 6.76% Castro::estTimeStep() 21 0.03695 0.06786 0.1099 3.47% Castro::initData() 1 0.0336 0.0696 0.1041 3.28% FabArray::ParallelCopy_finish() 41 0.04137 0.0614 0.09906 3.13% amrex::Copy() 193 0.06375 0.07707 0.08671 2.74% FabArray::setVal() 143 0.05395 0.06486 0.07351 2.32% FillPatchIterator::Initialize 41 0.0327 0.03945 0.04887 1.54% Castro::reset_internal_energy(Fab) 1008 0.04384 0.04538 0.04639 1.46% FabArray::ParallelCopy_nowait() 41 0.02749 0.03522 0.03856 1.22% StateData::FillBoundary(geom) 41 0.02974 0.03331 0.03637 1.15% Castro::normalize_species() 62 0.03245 0.03311 0.03388 1.07% Castro::initialize_do_advance() 10 0.01086 0.01745 0.02811 0.89% Castro::construct_new_gravity_source() 10 0.022 0.02317 0.02542 0.80% Gravity::interpolate_monopole_grav() 21 0.02465 0.02493 0.02534 0.80% Castro::computeTemp() 63 0.01811 0.01856 0.01915 0.60% FabArray::Saxpy() 20 0.01102 0.01242 0.0134 0.42% Amr::writePlotFile() 2 0.008558 0.01071 0.01316 0.42% MultiFab::contains_nan() 20 0.01038 0.01127 0.01267 0.40% Castro::initialize_advance() 10 0.005359 0.009701 0.01231 0.39% FabArray::setDomainBndry() 41 0.008067 0.01071 0.01168 0.37% Amr::coarseTimeStep() 10 0.002679 0.009022 0.01107 0.35% Castro::construct_old_gravity_source() 10 0.006954 0.009525 0.01057 0.33% Castro::initMFs() 1 0.006013 0.00731 0.009961 0.31% Castro::finalize_do_advance() 10 0.0005968 0.002792 0.009546 0.30% VisMF::Write(FabArray) 2 0.006286 0.007542 0.00952 0.30% StateData::define() 4 0.004995 0.005942 0.00775 0.24% Castro::construct_new_source() 50 0.005763 0.006099 0.006295 0.20% Gravity::get_new_grav_vector() 11 0.002887 0.003458 0.004046 0.13% Gravity::get_old_grav_vector() 10 0.002182 0.002942 0.003372 0.11% main() 1 0.001624 0.001859 0.001978 0.06% AmrLevel::FillPatch() 41 0.0008959 0.001035 0.001203 0.04% Amr::timeStep() 10 0.0001262 0.0001848 0.000377 0.01% Castro::reset_internal_energy(MultiFab) 63 0.000236 0.0002471 0.0002596 0.01% Castro::do_advance_ctu() 10 0.0001585 0.0001797 0.0002153 0.01% Castro::clean_state() 62 0.0001299 0.0001443 0.0001616 0.01% FillPatchIterator::FillFromLevel0() 41 0.0001046 0.0001149 0.00013 0.00% StateDataPhysBCFunct::() 41 8.836e-05 0.000101 0.0001218 0.00% Castro::do_old_sources() 10 8.197e-05 9.508e-05 0.0001099 0.00% FillPatchSingleLevel 41 7.119e-05 7.803e-05 9.415e-05 0.00% Castro::Castro() 1 5.362e-05 7.454e-05 9.39e-05 0.00% FabArray::ParallelCopy() 41 7.834e-05 8.61e-05 9.095e-05 0.00% Castro::construct_old_source() 50 5.788e-05 7.07e-05 8.573e-05 0.00% Amr::FinalizeInit() 1 3.813e-06 1.329e-05 7.697e-05 0.00% Castro::do_new_sources() 10 5.575e-05 6.264e-05 6.727e-05 0.00% Castro::advance() 10 4.499e-05 5.205e-05 6.649e-05 0.00% Castro::apply_source_to_state() 20 4.713e-05 5.308e-05 6.476e-05 0.00% Castro::subcycle_advance_ctu() 10 4.668e-05 5.298e-05 6.231e-05 0.00% Amr::defBaseLevel() 1 3.064e-05 3.961e-05 5.521e-05 0.00% Castro::construct_old_gravity() 10 3.398e-05 3.932e-05 4.514e-05 0.00% Castro::construct_new_gravity() 10 2.872e-05 3.438e-05 3.994e-05 0.00% Castro::expand_state() 10 1.813e-05 2.211e-05 2.635e-05 0.00% Castro::check_for_nan() 20 2.212e-05 2.357e-05 2.529e-05 0.00% Castro::post_timestep() 10 1.43e-05 1.656e-05 1.981e-05 0.00% AmrLevel::AmrLevel(dm) 1 9.967e-06 1.223e-05 1.777e-05 0.00% Amr::initialInit() 1 1.22e-06 3.219e-06 1.362e-05 0.00% Castro::computeNewDt() 9 8.662e-06 9.383e-06 1.041e-05 0.00% Castro::computeInitialDt() 2 4.855e-06 6.421e-06 7.796e-06 0.00% Amr::InitializeInit() 1 2.753e-06 3.759e-06 7.173e-06 0.00% Castro::post_init() 1 2.355e-06 2.818e-06 3.412e-06 0.00% Amr::init() 1 1.626e-06 2.282e-06 3.024e-06 0.00% Other 260 0.01132 0.01589 0.01892 0.60% ------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------- Name NCalls Incl. Min Incl. Avg Incl. Max Max % ------------------------------------------------------------------------------------------- main() 1 3.165 3.168 3.17 100.00% Amr::coarseTimeStep() 10 2.993 2.993 2.993 94.43% Amr::timeStep() 10 2.969 2.971 2.977 93.92% Castro::advance() 10 2.954 2.957 2.963 93.48% Castro::subcycle_advance_ctu() 10 2.883 2.889 2.898 91.42% Castro::do_advance_ctu() 10 2.883 2.889 2.898 91.42% Castro::construct_ctu_hydro_source() 10 2.154 2.158 2.164 68.28% Gravity::make_radial_gravity() 21 0.2949 0.3046 0.3138 9.90% AmrLevel::FillPatch() 41 0.1933 0.2115 0.2229 7.03% check_for_negative_density() 10 0.009351 0.1223 0.2143 6.76% Gravity::get_new_grav_vector() 11 0.2022 0.2044 0.2062 6.50% FillPatchIterator::Initialize 41 0.1637 0.1806 0.1987 6.27% Castro::construct_old_gravity() 10 0.1785 0.184 0.1901 6.00% Gravity::get_old_grav_vector() 10 0.1777 0.1833 0.1895 5.98% Castro::construct_new_gravity() 10 0.181 0.1828 0.1843 5.81% Castro::initialize_do_advance() 10 0.1654 0.1703 0.1742 5.50% Amr::init() 1 0.1624 0.1653 0.1668 5.26% FillPatchIterator::FillFromLevel0() 41 0.1091 0.1304 0.1579 4.98% FillPatchSingleLevel 41 0.1089 0.1303 0.1578 4.98% Amr::initialInit() 1 0.1491 0.152 0.1535 4.84% Castro::expand_state() 10 0.1056 0.1191 0.1302 4.11% Amr::InitializeInit() 1 0.05557 0.09282 0.127 4.01% Amr::defBaseLevel() 1 0.05557 0.09282 0.127 4.01% FabArray::ParallelCopy() 41 0.07591 0.09679 0.1268 4.00% Castro::estTimeStep() 21 0.03695 0.06786 0.1099 3.47% Castro::initData() 1 0.03699 0.07295 0.1074 3.39% Castro::clean_state() 62 0.1003 0.1029 0.1048 3.31% FabArray::ParallelCopy_finish() 41 0.04137 0.0614 0.09906 3.13% Amr::FinalizeInit() 1 0.02532 0.05919 0.09793 3.09% Castro::do_old_sources() 10 0.09159 0.09467 0.09722 3.07% amrex::Copy() 193 0.06375 0.07707 0.08671 2.74% Castro::computeInitialDt() 2 0.002215 0.0361 0.07472 2.36% FabArray::setVal() 143 0.05395 0.06486 0.07351 2.32% Castro::initialize_advance() 10 0.05364 0.065 0.07002 2.21% Castro::do_new_sources() 10 0.05642 0.06079 0.06765 2.13% Castro::computeTemp() 63 0.0622 0.06419 0.06567 2.07% Castro::reset_internal_energy(MultiFab) 63 0.04408 0.04563 0.04663 1.47% Castro::reset_internal_energy(Fab) 1008 0.04384 0.04538 0.04639 1.46% FabArray::ParallelCopy_nowait() 41 0.02761 0.03531 0.03865 1.22% StateDataPhysBCFunct::() 41 0.02983 0.03341 0.03647 1.15% StateData::FillBoundary(geom) 41 0.02974 0.03331 0.03637 1.15% Castro::normalize_species() 62 0.03245 0.03311 0.03388 1.07% Castro::construct_new_source() 50 0.02783 0.02927 0.03159 1.00% Castro::finalize_do_advance() 10 0.01455 0.02216 0.02959 0.93% Castro::construct_new_gravity_source() 10 0.022 0.02317 0.02542 0.80% Gravity::interpolate_monopole_grav() 21 0.02465 0.02493 0.02534 0.80% Castro::post_init() 1 0.02238 0.02284 0.02299 0.73% Amr::writePlotFile() 2 0.0207 0.02081 0.02131 0.67% Castro::post_timestep() 10 0.01359 0.01402 0.01461 0.46% Castro::Castro() 1 0.009164 0.01088 0.01407 0.44% Castro::apply_source_to_state() 20 0.01107 0.01248 0.01345 0.42% FabArray::Saxpy() 20 0.01102 0.01242 0.0134 0.42% Castro::check_for_nan() 20 0.0104 0.01129 0.0127 0.40% MultiFab::contains_nan() 20 0.01038 0.01127 0.01267 0.40% Castro::computeNewDt() 9 0.01239 0.0124 0.01242 0.39% FabArray::setDomainBndry() 41 0.008067 0.01071 0.01168 0.37% Castro::construct_old_source() 50 0.00702 0.009596 0.01065 0.34% Castro::construct_old_gravity_source() 10 0.006954 0.009525 0.01057 0.33% Castro::initMFs() 1 0.006013 0.00731 0.009961 0.31% VisMF::Write(FabArray) 2 0.006286 0.007542 0.00952 0.30% AmrLevel::AmrLevel(dm) 1 0.005005 0.005954 0.007768 0.25% StateData::define() 4 0.004995 0.005942 0.00775 0.24% Other 260 0.01497 0.02308 0.02801 0.88% ------------------------------------------------------------------------------------------- Unused ParmParse Variables: [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.regrid_int(nvals = 4) :: [2, 2, 2, 2] Async Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB -------------------------------------------------------------------------------------------------------------------- Pinned Memory Usage: -------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------- The_Pinned_Arena::Initialize() 8 3 B 3 B 5 B 8192 KiB 8192 KiB 8192 KiB -------------------------------------------------------------------------------------------------------------- Comms Memory Usage: --------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max --------------------------------------------------------------------------------------------------------------- The_Comms_Arena::Initialize() 8 1 B 1 B 1 B 8192 KiB 8192 KiB 8192 KiB FabArray::ParallelCopy_nowait() 656 34 KiB 47 KiB 64 KiB 2170 KiB 2170 KiB 2170 KiB --------------------------------------------------------------------------------------------------------------- Cpu Memory Usage: -------------------------------------------------------------------------------------------------------------------- Name Nalloc AvgMem min AvgMem avg AvgMem max MaxMem min MaxMem avg MaxMem max -------------------------------------------------------------------------------------------------------------------- Castro::construct_ctu_hydro_source() 2880 13 MiB 14 MiB 14 MiB 24 MiB 24 MiB 24 MiB Castro::initMFs() 48 8640 KiB 8646 KiB 8651 KiB 8712 KiB 8712 KiB 8712 KiB Castro::swap_state_time_levels() 32 6744 KiB 6752 KiB 6756 KiB 7154 KiB 7154 KiB 7154 KiB StateData::define() 32 7113 KiB 7122 KiB 7124 KiB 7154 KiB 7154 KiB 7154 KiB Castro::initialize_do_advance() 80 4535 KiB 4542 KiB 4560 KiB 5000 KiB 5000 KiB 5000 KiB FillPatchIterator::Initialize 328 227 KiB 251 KiB 270 KiB 5000 KiB 5000 KiB 5000 KiB Amr::writePlotFile() 16 12 KiB 15 KiB 20 KiB 3584 KiB 3584 KiB 3584 KiB Castro::initialize_advance() 80 2791 KiB 2792 KiB 2800 KiB 3001 KiB 3001 KiB 3001 KiB Gravity::make_radial_gravity() 168 236 KiB 244 KiB 252 KiB 2560 KiB 2560 KiB 2560 KiB Castro::buildMetrics() 32 2022 KiB 2024 KiB 2025 KiB 2037 KiB 2037 KiB 2037 KiB Gravity::get_new_grav_vector() 88 81 KiB 82 KiB 83 KiB 1286 KiB 1286 KiB 1286 KiB Gravity::get_old_grav_vector() 80 71 KiB 74 KiB 76 KiB 1286 KiB 1286 KiB 1286 KiB -------------------------------------------------------------------------------------------------------------------- AMReX (26.11-18-g21e455c381db) finalized