Initializing AMReX (24.10-18-g92679babfc2c)... MPI initialized with 2 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (24.10-18-g92679babfc2c) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = cutoff densities: low density cutoff (for mapping the model) = 1e-10 buoyancy cutoff density (for zeroing rho - rho_0, centrifugal term) = 5e-10 anelastic cutoff = 1e-10 Maximum HSE Error = 2.273736754e-13 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile RT_pltInitData after InitData Time to write plotfile: 0.066978463 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.003209455 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile RT_pltafter_InitProj after InitProj Time to write plotfile: 0.05019281 Call to firstdt for level 0 gives dt_lev = 0.0006089835859 Multiplying dt_lev by init_shrink; dt_lev = 6.089835859e-05 Minimum firstdt over all levels = 6.089835859e-05 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.003065762 Iter = 0 Bottom = 0 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.08660444773 Minimum estdt over all levels = 0.08660444773 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.08660444773 Multiplying dt by init_shrink; dt = 0.008660444773 Ignoring this new dt since it's larger than the previous dt = 6.089835859e-05 Writing plotfile RT_pltafter_DivuIter after final DivuIter Time to write plotfile: 0.047975066 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 6.089835859e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 0.002421164472 MLMG: Initial residual (resid0) = 0.002421164472 MLMG: Final Iter. 9 resid, resid/bnorm = 1.751907767e-13, 7.235806522e-11 MLMG: Timers: Solve = 0.039908111 Iter = 0.038038894 Bottom = 0.004736586 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 0.002421205691 MLMG: Initial residual (resid0) = 2.151449931e-06 MLMG: Final Iter. 7 resid, resid/bnorm = 9.927909435e-14, 4.100399017e-11 MLMG: Timers: Solve = 0.02932586 Iter = 0.027595072 Bottom = 0.003304411 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 58.12657035 MLMG: Initial residual (resid0) = 58.12657035 MLMG: Final Iter. 8 resid, resid/bnorm = 2.15578666e-11, 3.708780077e-13 MLMG: Timers: Solve = 0.05437044 Iter = 0.05280167 Bottom = 0.00470874 Done calling nodal solver Timestep 0 ends with TIME = 6.089835859e-05 DT = 6.089835859e-05 Timing summary: Advection :0.084093905 seconds MAC Proj :0.0769407 seconds Nodal Proj :0.061184015 seconds Reactions :0.004541313 seconds Misc :0.024794383 seconds Base State :0.0004281940005 seconds Time to advance time step: 0.255147003 Writing plotfile 0 after all initialization Time to write plotfile: 0.039131729 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 6.089835859e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2.394238647e-05 MLMG: Initial residual (resid0) = 2.394238647e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 3.181792236e-16, 1.328936963e-11 MLMG: Timers: Solve = 0.036863626 Iter = 0.035218572 Bottom = 0.004607702 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2.394218844e-05 MLMG: Initial residual (resid0) = 1.928423574e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 6.036511589e-16, 2.521286475e-11 MLMG: Timers: Solve = 0.03743737 Iter = 0.035667311 Bottom = 0.004175079 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003539812449 MLMG: Initial residual (resid0) = 0.003539812449 MLMG: Final Iter. 8 resid, resid/bnorm = 1.329231863e-15, 3.755091216e-13 MLMG: Timers: Solve = 0.054618986 Iter = 0.052994022 Bottom = 0.004637339 Done calling nodal solver Timestep 1 ends with TIME = 6.089835859e-05 DT = 6.089835859e-05 Timing summary: Advection :0.07940609 seconds MAC Proj :0.081017138 seconds Nodal Proj :0.061499155 seconds Reactions :0.00386435 seconds Misc :0.012649983 seconds Base State :0.0004449369994 seconds Time to advance time step: 0.24208984 Call to estdt for level 0 gives dt_lev = 0.3128878797 Minimum estdt over all levels = 0.3128878797 Call to estdt at beginning of step 2 gives dt =0.3128878797 dt_growth factor limits the new dt = 6.698819445e-05  Timestep 2 starts with TIME = 6.089835859e-05 DT = 6.698819445e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.050043585e-05 MLMG: Initial residual (resid0) = 3.050043585e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 2.284814624e-15, 7.491088439e-11 MLMG: Timers: Solve = 0.037447357 Iter = 0.035691223 Bottom = 0.004439904 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.059063412e-05 MLMG: Initial residual (resid0) = 5.66083759e-06 MLMG: Final Iter. 10 resid, resid/bnorm = 4.892627475e-16, 1.599387399e-11 MLMG: Timers: Solve = 0.040821537 Iter = 0.039084853 Bottom = 0.004520274 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003894013591 MLMG: Initial residual (resid0) = 0.003894013591 MLMG: Final Iter. 8 resid, resid/bnorm = 1.490994828e-15, 3.828940996e-13 MLMG: Timers: Solve = 0.054562715 Iter = 0.052946993 Bottom = 0.004544602 Done calling nodal solver Timestep 2 ends with TIME = 0.000127886553 DT = 6.698819445e-05 Timing summary: Advection :0.078390206 seconds MAC Proj :0.085035754 seconds Nodal Proj :0.061360925 seconds Reactions :0.004135929 seconds Misc :0.013261432 seconds Base State :0.0004117939998 seconds Time to advance time step: 0.242476725 Call to estdt for level 0 gives dt_lev = 0.3130286362 Minimum estdt over all levels = 0.3130286362 Call to estdt at beginning of step 3 gives dt =0.3130286362 dt_growth factor limits the new dt = 7.36870139e-05  Timestep 3 starts with TIME = 0.000127886553 DT = 7.36870139e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.168800511e-05 MLMG: Initial residual (resid0) = 3.168800511e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 5.650700787e-16, 1.783230205e-11 MLMG: Timers: Solve = 0.052025052 Iter = 0.050211804 Bottom = 0.009421728 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.178722337e-05 MLMG: Initial residual (resid0) = 1.012935749e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 6.833616179e-16, 2.149799653e-11 MLMG: Timers: Solve = 0.042839383 Iter = 0.041112023 Bottom = 0.005466803 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004283414244 MLMG: Initial residual (resid0) = 0.004283414244 MLMG: Final Iter. 8 resid, resid/bnorm = 1.614810716e-15, 3.769914894e-13 MLMG: Timers: Solve = 0.057066287 Iter = 0.055404016 Bottom = 0.005320853 Done calling nodal solver Timestep 3 ends with TIME = 0.0002015735669 DT = 7.36870139e-05 Timing summary: Advection :0.086501054 seconds MAC Proj :0.102937861 seconds Nodal Proj :0.064517179 seconds Reactions :0.005325182 seconds Misc :0.012730675 seconds Base State :0.0008019530014 seconds Time to advance time step: 0.272421043 Call to estdt for level 0 gives dt_lev = 0.3130285358 Minimum estdt over all levels = 0.3130285358 Call to estdt at beginning of step 4 gives dt =0.3130285358 dt_growth factor limits the new dt = 8.105571529e-05  Timestep 4 starts with TIME = 0.0002015735669 DT = 8.105571529e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.570538736e-05 MLMG: Initial residual (resid0) = 3.570538736e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 7.571110825e-16, 2.120439347e-11 MLMG: Timers: Solve = 0.043106462 Iter = 0.041446547 Bottom = 0.00595391 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.581452755e-05 MLMG: Initial residual (resid0) = 1.504387741e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 8.870129024e-16, 2.476684639e-11 MLMG: Timers: Solve = 0.041683555 Iter = 0.040200192 Bottom = 0.005097151 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004711755906 MLMG: Initial residual (resid0) = 0.004711755906 MLMG: Final Iter. 8 resid, resid/bnorm = 1.768550584e-15, 3.753485153e-13 MLMG: Timers: Solve = 0.05393482 Iter = 0.052348389 Bottom = 0.004902806 Done calling nodal solver Timestep 4 ends with TIME = 0.0002826292822 DT = 8.105571529e-05 Timing summary: Advection :0.072040285 seconds MAC Proj :0.091508749 seconds Nodal Proj :0.060042434 seconds Reactions :0.003848543 seconds Misc :0.015856312 seconds Base State :0.0003905789999 seconds Time to advance time step: 0.243613969 Call to estdt for level 0 gives dt_lev = 0.313028505 Minimum estdt over all levels = 0.313028505 Call to estdt at beginning of step 5 gives dt =0.313028505 dt_growth factor limits the new dt = 8.916128682e-05  Timestep 5 starts with TIME = 0.0002826292822 DT = 8.916128682e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 4.013180326e-05 MLMG: Initial residual (resid0) = 4.013180326e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 9.681425651e-16, 2.412407334e-11 MLMG: Timers: Solve = 0.041924973 Iter = 0.040357095 Bottom = 0.005075102 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 4.025185748e-05 MLMG: Initial residual (resid0) = 2.044985444e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 1.111036176e-15, 2.760210946e-11 MLMG: Timers: Solve = 0.041799557 Iter = 0.040196541 Bottom = 0.004813562 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.005182931901 MLMG: Initial residual (resid0) = 0.005182931901 MLMG: Final Iter. 8 resid, resid/bnorm = 1.942022931e-15, 3.746958224e-13 MLMG: Timers: Solve = 0.05442825 Iter = 0.052782265 Bottom = 0.004650905 Done calling nodal solver Timestep 5 ends with TIME = 0.000371790569 DT = 8.916128682e-05 Timing summary: Advection :0.075054569 seconds MAC Proj :0.09045185 seconds Nodal Proj :0.060901888 seconds Reactions :0.002940532 seconds Misc :0.011231551 seconds Base State :0.0004179399998 seconds Time to advance time step: 0.240929102 Writing plotfile 5 Time to write plotfile: 0.094284092 Total Time: 1.857735802 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [RT_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (24.10-18-g92679babfc2c) finalized