Initializing AMReX (25.05-4-g793ea9f71759)...
MPI initialized with 4 MPI processes
MPI initialized with thread support level 0
AMReX (25.05-4-g793ea9f71759) initialized
Calling Setup()
Calling ReadParameters()
reading extern runtime parameters ...
Calling VariableSetup()
Calling BCSetup()
Calling BaseStateGeometry::Init()
Calling Init()
Calling InitData()
initdata model_File = model.hse.cool.coulomb
model file = model.hse.cool.coulomb
reading initial model
640 points found in the initial model
6 variables found in the initial model
model file mapping, level: 0
dr of MAESTRO base state = 562500.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 365
radius at r_cutoff 205593750
Maximum HSE Error = 0.000061
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
model file mapping, level: 1
dr of MAESTRO base state = 281250.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 729
radius at r_cutoff 205171875
Maximum HSE Error = 0.500936
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
Writing plotfile reacting_bubble-2d-amr_pltInitData after InitData
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 1.150312268
inner sponge: r_sp , r_tp : 186468750, 224718750
[1m[32mDoing initial projection[0m
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.005462968 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-2d-amr_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 1.102265764
Call to firstdt for level 0 gives dt_lev = 0.0004741795922
Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795922
Call to firstdt for level 1 gives dt_lev = 0.0002743178815
Multiplying dt_lev by init_shrink; dt_lev = 0.0002743178815
Minimum firstdt over all levels = 0.0002743178815
[1m[32mDoing initial divu iteration #1[0m
Calling nodal solver
MLMG: Initial rhs = 9701.860973
MLMG: Initial residual (resid0) = 9701.860973
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0003239456123, 3.33900489e-08
MLMG: Timers: Solve = 0.116639123 Iter = 0.111210311 Bottom = 0.000146804
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.1641628699
Call to estdt for level 1 gives dt_lev = 0.1158500463
Minimum estdt over all levels = 0.1158500463
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1158500463
Multiplying dt by init_shrink; dt = 0.1158500463
Ignoring this new dt since it's larger than the previous dt = 0.0002743178815
Writing plotfile reacting_bubble-2d-amr_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 1.097540744
[1m[32mDoing initial pressure iteration #1[0m
[1m[32m
Timestep 0 starts with TIME = 0 DT = 0.0002743178815[0m
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1769558.576
MLMG: Initial residual (resid0) = 1769558.576
MLMG: Final Iter. 7 resid, resid/bnorm = 0.001462788824, 8.266405216e-10
MLMG: Timers: Solve = 0.068773273 Iter = 0.062343524 Bottom = 0.000237363
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1769557.101
MLMG: Initial residual (resid0) = 12562.98069
MLMG: Final Iter. 4 resid, resid/bnorm = 0.0003393793395, 1.9178773e-10
MLMG: Timers: Solve = 0.040449132 Iter = 0.03712805 Bottom = 0.000124472
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.293088754e+10
MLMG: Initial residual (resid0) = 1.293088754e+10
MLMG: Final Iter. 9 resid, resid/bnorm = 0.0536775589, 4.151111726e-12
MLMG: Timers: Solve = 0.204136237 Iter = 0.200510688 Bottom = 0.000275613
Done calling nodal solver
Timestep 0 ends with TIME = 0.0002743178815 DT = 0.0002743178815
Timing summary:
Advection :0.386595791 seconds
MAC Proj :0.121197652 seconds
Nodal Proj :0.257452336 seconds
Reactions :1.620949725 seconds
Misc :0.297683301 seconds
Base State :0.001505414 seconds
Time to advance time step: 2.700858035
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 1.084742469
Writing checkpoint 0 after all initialization
Writing checkpoint reacting_bubble_2d_chk0000000
[1m[32mBeginning main evolution[0m
[1m[32m
Timestep 1 starts with TIME = 0 DT = 0.0002743178815[0m
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 484084.2371
MLMG: Initial residual (resid0) = 484084.2371
MLMG: Final Iter. 7 resid, resid/bnorm = 3.840929897e-05, 7.934424635e-11
MLMG: Timers: Solve = 0.067580827 Iter = 0.064175784 Bottom = 0.000239044
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 484084.2265
MLMG: Initial residual (resid0) = 15.74076829
MLMG: Final Iter. 3 resid, resid/bnorm = 0.0002655449432, 5.485511169e-10
MLMG: Timers: Solve = 0.031241611 Iter = 0.0278582 Bottom = 0.000104185
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 3547174.998
MLMG: Initial residual (resid0) = 3547174.998
MLMG: Final Iter. 9 resid, resid/bnorm = 1.467764378e-05, 4.137840334e-12
MLMG: Timers: Solve = 0.203490715 Iter = 0.199874921 Bottom = 0.000261561
Done calling nodal solver
Timestep 1 ends with TIME = 0.0002743178815 DT = 0.0002743178815
Timing summary:
Advection :0.358615935 seconds
MAC Proj :0.109268107 seconds
Nodal Proj :0.264564188 seconds
Reactions :1.612556225 seconds
Misc :0.275430862 seconds
Base State :0.001455478001 seconds
Time to advance time step: 2.644222241
Call to estdt for level 0 gives dt_lev = 0.2285161774
Call to estdt for level 1 gives dt_lev = 0.1613599181
Minimum estdt over all levels = 0.1613599181
Call to estdt at beginning of step 2 gives dt =0.1613599181
dt_growth factor limits the new dt = 0.0003017496696
[1m[32m
Timestep 2 starts with TIME = 0.0002743178815 DT = 0.0003017496696[0m
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 709087.2083
MLMG: Initial residual (resid0) = 709087.2083
MLMG: Final Iter. 6 resid, resid/bnorm = 0.0005366311702, 7.567914974e-10
MLMG: Timers: Solve = 0.056563981 Iter = 0.053176573 Bottom = 0.000198915
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 709086.6226
MLMG: Initial residual (resid0) = 129230.7288
MLMG: Final Iter. 5 resid, resid/bnorm = 9.585541477e-05, 1.351815303e-10
MLMG: Timers: Solve = 0.047836845 Iter = 0.044449644 Bottom = 0.000164953
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 3903892.245
MLMG: Initial residual (resid0) = 3903892.245
MLMG: Final Iter. 9 resid, resid/bnorm = 1.619942486e-05, 4.149557377e-12
MLMG: Timers: Solve = 0.203583446 Iter = 0.199959756 Bottom = 0.000284537
Done calling nodal solver
Timestep 2 ends with TIME = 0.0005760675511 DT = 0.0003017496696
Timing summary:
Advection :0.377281654 seconds
MAC Proj :0.11497317 seconds
Nodal Proj :0.256299197 seconds
Reactions :1.620287989 seconds
Misc :0.294471644 seconds
Base State :0.002146927 seconds
Time to advance time step: 2.66375122
Time to regrid: 0.130792792
Call to estdt for level 0 gives dt_lev = 0.2285277611
Call to estdt for level 1 gives dt_lev = 0.161379943
Minimum estdt over all levels = 0.161379943
Call to estdt at beginning of step 3 gives dt =0.161379943
dt_growth factor limits the new dt = 0.0003319246366
[1m[32m
Timestep 3 starts with TIME = 0.0005760675511 DT = 0.0003319246366[0m
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1070293.273
MLMG: Initial residual (resid0) = 1070293.273
MLMG: Final Iter. 6 resid, resid/bnorm = 0.0005793995088, 5.413464922e-10
MLMG: Timers: Solve = 0.056671376 Iter = 0.05329755 Bottom = 0.000200931
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1070292.628
MLMG: Initial residual (resid0) = 47909.95947
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0001436926852, 1.342555124e-10
MLMG: Timers: Solve = 0.047763039 Iter = 0.044372261 Bottom = 0.000155467
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 4294280.633
MLMG: Initial residual (resid0) = 4294280.633
MLMG: Final Iter. 9 resid, resid/bnorm = 1.781014726e-05, 4.147411121e-12
MLMG: Timers: Solve = 0.203413421 Iter = 0.199793072 Bottom = 0.000256271
Done calling nodal solver
Timestep 3 ends with TIME = 0.0009079921877 DT = 0.0003319246366
Timing summary:
Advection :0.363513717 seconds
MAC Proj :0.114922202 seconds
Nodal Proj :0.255801198 seconds
Reactions :1.614143681 seconds
Misc :0.279691546 seconds
Base State :0.001507990001 seconds
Time to advance time step: 2.628465305
Writing plotfile 3
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 1.082320638
Writing checkpoint 3
Writing checkpoint reacting_bubble_2d_chk0000003
Total Time: 18.6265335
Unused ParmParse Variables:
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-2d-amr_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
AMReX (25.05-4-g793ea9f71759) finalized