Initializing AMReX (25.05-4-g793ea9f71759)...
MPI initialized with 4 MPI processes
MPI initialized with thread support level 0
OMP initialized with 4 OMP threads
AMReX (25.05-4-g793ea9f71759) initialized
Calling Setup()
Calling ReadParameters()
reading extern runtime parameters ...
Calling VariableSetup()
Calling BCSetup()
Calling BaseStateGeometry::Init()
Calling Init()
Calling InitData()
initdata model_File = model.hse.cool.coulomb
model file = model.hse.cool.coulomb
reading initial model
640 points found in the initial model
6 variables found in the initial model
model file mapping, level: 0
dr of MAESTRO base state = 2250000.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 91
radius at r_cutoff 205875000
Maximum HSE Error = 0.006358
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
model file mapping, level: 1
dr of MAESTRO base state = 1125000.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 182
radius at r_cutoff 205312500
Maximum HSE Error = 0.001719
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
model file mapping, level: 2
dr of MAESTRO base state = 562500.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 365
radius at r_cutoff 205593750
Maximum HSE Error = 0.000061
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
Writing plotfile reacting_bubble-3d-amr_pltInitData after InitData
inner sponge: r_sp , r_tp : 187875000, 223875000
Time to write plotfile: 0.308239285
inner sponge: r_sp , r_tp : 187875000, 223875000
[1m[32mDoing initial projection[0m
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.003773648 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-3d-amr_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 187875000, 223875000
Time to write plotfile: 0.304157546
Call to firstdt for level 0 gives dt_lev = 0.001900185702
Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702
Call to firstdt for level 1 gives dt_lev = 0.001145985589
Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589
Call to firstdt for level 2 gives dt_lev = 0.0005809423507
Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507
Minimum firstdt over all levels = 0.0005809423507
[1m[32mDoing initial divu iteration #1[0m
Calling nodal solver
MLMG: Initial rhs = 3375.753789
MLMG: Initial residual (resid0) = 3375.753789
MLMG: Final Iter. 7 resid, resid/bnorm = 2.235684234e-07, 6.62277042e-11
MLMG: Timers: Solve = 0.160835493 Iter = 0.156153243 Bottom = 0.010117649
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.3446506058
Call to estdt for level 1 gives dt_lev = 0.2371958412
Call to estdt for level 2 gives dt_lev = 0.166684761
Minimum estdt over all levels = 0.166684761
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761
Multiplying dt by init_shrink; dt = 0.166684761
Ignoring this new dt since it's larger than the previous dt = 0.0005809423507
Writing plotfile reacting_bubble-3d-amr_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 187875000, 223875000
Time to write plotfile: 0.276234471
[1m[32mDoing initial pressure iteration #1[0m
[1m[32m
Timestep 0 starts with TIME = 0 DT = 0.0005809423507[0m
Cell Count:
Level 0, 32768 cells
Level 1, 24576 cells
Level 2, 131072 cells
inner sponge: r_sp , r_tp : 187875000, 223875000
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 3473324.294
MLMG: Initial residual (resid0) = 3473324.294
MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037211321, 5.865306976e-10
MLMG: Timers: Solve = 0.066987336 Iter = 0.060990794 Bottom = 0.014019622
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 3473321.253
MLMG: Initial residual (resid0) = 152.3725369
MLMG: Final Iter. 3 resid, resid/bnorm = 0.007682693352, 2.211915568e-09
MLMG: Timers: Solve = 0.03074128 Iter = 0.026722061 Bottom = 0.005865299
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.202681384e+10
MLMG: Initial residual (resid0) = 1.202681384e+10
MLMG: Final Iter. 9 resid, resid/bnorm = 0.1560537815, 1.297548823e-11
MLMG: Timers: Solve = 0.206746515 Iter = 0.203310763 Bottom = 0.013915408
Done calling nodal solver
Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507
Timing summary:
Advection :0.415365146 seconds
MAC Proj :0.117498499 seconds
Nodal Proj :0.233892009 seconds
Reactions :0.349062887 seconds
Misc :0.095860227 seconds
Base State :0.004366376 seconds
Time to advance time step: 1.227610306
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 187875000, 223875000
Time to write plotfile: 0.266241214
[1m[32mBeginning main evolution[0m
[1m[32m
Timestep 1 starts with TIME = 0 DT = 0.0005809423507[0m
Cell Count:
Level 0, 32768 cells
Level 1, 24576 cells
Level 2, 131072 cells
inner sponge: r_sp , r_tp : 187875000, 223875000
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 807172.7037
MLMG: Initial residual (resid0) = 807172.7037
MLMG: Final Iter. 6 resid, resid/bnorm = 0.005743324291, 7.115359903e-09
MLMG: Timers: Solve = 0.056676878 Iter = 0.052532674 Bottom = 0.011920012
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 807172.7215
MLMG: Initial residual (resid0) = 0.8173203353
MLMG: Final Iter. 2 resid, resid/bnorm = 0.0002824680705, 3.499474932e-10
MLMG: Timers: Solve = 0.022306469 Iter = 0.0181884 Bottom = 0.003763717
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6986896.692
MLMG: Initial residual (resid0) = 6986896.692
MLMG: Final Iter. 9 resid, resid/bnorm = 9.066174971e-05, 1.297596826e-11
MLMG: Timers: Solve = 0.211577772 Iter = 0.208155983 Bottom = 0.014573823
Done calling nodal solver
Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507
Timing summary:
Advection :0.38233726 seconds
MAC Proj :0.096603771 seconds
Nodal Proj :0.238998739 seconds
Reactions :0.356897388 seconds
Misc :0.079432907 seconds
Base State :0.00437806 seconds
Time to advance time step: 1.169749965
Call to estdt for level 0 gives dt_lev = 0.4121759496
Call to estdt for level 1 gives dt_lev = 0.2828508339
Call to estdt for level 2 gives dt_lev = 0.198551117
Minimum estdt over all levels = 0.198551117
Call to estdt at beginning of step 2 gives dt =0.198551117
dt_growth factor limits the new dt = 0.0006390365858
[1m[32m
Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858[0m
Cell Count:
Level 0, 32768 cells
Level 1, 24576 cells
Level 2, 131072 cells
inner sponge: r_sp , r_tp : 187875000, 223875000
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 862408.7998
MLMG: Initial residual (resid0) = 862408.7998
MLMG: Final Iter. 6 resid, resid/bnorm = 0.005907685729, 6.850215037e-09
MLMG: Timers: Solve = 0.0570569 Iter = 0.05352466 Bottom = 0.014175786
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 862410.8019
MLMG: Initial residual (resid0) = 10430.26042
MLMG: Final Iter. 4 resid, resid/bnorm = 0.001076968352, 1.248788106e-09
MLMG: Timers: Solve = 0.039227298 Iter = 0.03524951 Bottom = 0.008258201
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 7717168.571
MLMG: Initial residual (resid0) = 7717168.571
MLMG: Final Iter. 9 resid, resid/bnorm = 9.889726061e-05, 1.281522617e-11
MLMG: Timers: Solve = 0.212389991 Iter = 0.209145724 Bottom = 0.014539193
Done calling nodal solver
Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858
Timing summary:
Advection :0.376782436 seconds
MAC Proj :0.113549262 seconds
Nodal Proj :0.239212825 seconds
Reactions :0.351707067 seconds
Misc :0.078569772 seconds
Base State :0.00430083 seconds
Time to advance time step: 1.160259874
Call to estdt for level 0 gives dt_lev = 0.412322209
Call to estdt for level 1 gives dt_lev = 0.2829378846
Call to estdt for level 2 gives dt_lev = 0.1986205604
Minimum estdt over all levels = 0.1986205604
Call to estdt at beginning of step 3 gives dt =0.1986205604
dt_growth factor limits the new dt = 0.0007029402444
[1m[32m
Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444[0m
Cell Count:
Level 0, 32768 cells
Level 1, 24576 cells
Level 2, 131072 cells
inner sponge: r_sp , r_tp : 187875000, 223875000
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 978885.4037
MLMG: Initial residual (resid0) = 978885.4037
MLMG: Final Iter. 6 resid, resid/bnorm = 0.006846081349, 6.993751591e-09
MLMG: Timers: Solve = 0.059882542 Iter = 0.056118895 Bottom = 0.015264407
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 978885.8232
MLMG: Initial residual (resid0) = 1095.71815
MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084094298, 1.107477779e-09
MLMG: Timers: Solve = 0.042809699 Iter = 0.037978279 Bottom = 0.007625515
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 8489041.657
MLMG: Initial residual (resid0) = 8489041.657
MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001069692662, 1.26008648e-11
MLMG: Timers: Solve = 0.213692655 Iter = 0.210197724 Bottom = 0.014524778
Done calling nodal solver
Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444
Timing summary:
Advection :0.396670426 seconds
MAC Proj :0.120989328 seconds
Nodal Proj :0.240699876 seconds
Reactions :0.359260803 seconds
Misc :0.081685198 seconds
Base State :0.004490826001 seconds
Time to advance time step: 1.199758157
Writing plotfile 3
inner sponge: r_sp , r_tp : 187875000, 223875000
Time to write plotfile: 0.278364026
Total Time: 7.805608778
Unused ParmParse Variables:
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d-amr_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
AMReX (25.05-4-g793ea9f71759) finalized