Initializing AMReX (26.03-91-gf546b598fb75)... MPI initialized with 2 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.03-91-gf546b598fb75) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = cutoff densities: low density cutoff (for mapping the model) = 1e-10 buoyancy cutoff density (for zeroing rho - rho_0, centrifugal term) = 5e-10 anelastic cutoff = 1e-10 Maximum HSE Error = 4.547473509e-13 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile RT_pltInitData after InitData Time to write plotfile: 0.065802751 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.003281953 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile RT_pltafter_InitProj after InitProj Time to write plotfile: 0.052120637 Call to firstdt for level 0 gives dt_lev = 0.0006089835859 Multiplying dt_lev by init_shrink; dt_lev = 6.089835859e-05 Minimum firstdt over all levels = 6.089835859e-05 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.003130354 Iter = 0 Bottom = 0 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.08660444773 Minimum estdt over all levels = 0.08660444773 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.08660444773 Multiplying dt by init_shrink; dt = 0.008660444773 Ignoring this new dt since it's larger than the previous dt = 6.089835859e-05 Writing plotfile RT_pltafter_DivuIter after final DivuIter Time to write plotfile: 0.048074714 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 6.089835859e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 0.002421164472 MLMG: Initial residual (resid0) = 0.002421164472 MLMG: Final Iter. 9 resid, resid/bnorm = 1.751907767e-13, 7.235806522e-11 MLMG: Timers: Solve = 0.031384712 Iter = 0.029888696 Bottom = 0.003378519 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 0.002421205691 MLMG: Initial residual (resid0) = 2.151449931e-06 MLMG: Final Iter. 7 resid, resid/bnorm = 9.927909435e-14, 4.100399017e-11 MLMG: Timers: Solve = 0.024566082 Iter = 0.023177559 Bottom = 0.002485539 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 58.12657035 MLMG: Initial residual (resid0) = 58.12657035 MLMG: Final Iter. 8 resid, resid/bnorm = 2.15578666e-11, 3.708780077e-13 MLMG: Timers: Solve = 0.050169841 Iter = 0.048735313 Bottom = 0.002243294 Done calling nodal solver Timestep 0 ends with TIME = 6.089835859e-05 DT = 6.089835859e-05 Timing summary: Advection :0.078031783 seconds MAC Proj :0.062757746 seconds Nodal Proj :0.05603565 seconds Reactions :0.003880494 seconds Misc :0.024745628 seconds Base State :0.0003980369997 seconds Time to advance time step: 0.228961796 Writing plotfile 0 after all initialization Time to write plotfile: 0.044293161 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 6.089835859e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2.394238647e-05 MLMG: Initial residual (resid0) = 2.394238647e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 3.181792236e-16, 1.328936963e-11 MLMG: Timers: Solve = 0.032960974 Iter = 0.031310917 Bottom = 0.003401118 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2.394218844e-05 MLMG: Initial residual (resid0) = 1.928423574e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 6.036511589e-16, 2.521286475e-11 MLMG: Timers: Solve = 0.032389552 Iter = 0.030727409 Bottom = 0.002977487 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003539812449 MLMG: Initial residual (resid0) = 0.003539812449 MLMG: Final Iter. 8 resid, resid/bnorm = 1.329231863e-15, 3.755091216e-13 MLMG: Timers: Solve = 0.050977555 Iter = 0.049347634 Bottom = 0.002214786 Done calling nodal solver Timestep 1 ends with TIME = 6.089835859e-05 DT = 6.089835859e-05 Timing summary: Advection :0.076566389 seconds MAC Proj :0.072017833 seconds Nodal Proj :0.057264275 seconds Reactions :0.003899876 seconds Misc :0.012994873 seconds Base State :0.0004507520002 seconds Time to advance time step: 0.22583114 Call to estdt for level 0 gives dt_lev = 0.3128878797 Minimum estdt over all levels = 0.3128878797 Call to estdt at beginning of step 2 gives dt =0.3128878797 dt_growth factor limits the new dt = 6.698819445e-05  Timestep 2 starts with TIME = 6.089835859e-05 DT = 6.698819445e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.050043585e-05 MLMG: Initial residual (resid0) = 3.050043585e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 2.284814624e-15, 7.491088439e-11 MLMG: Timers: Solve = 0.031265597 Iter = 0.029761126 Bottom = 0.003312598 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.059063412e-05 MLMG: Initial residual (resid0) = 5.66083759e-06 MLMG: Final Iter. 10 resid, resid/bnorm = 4.892627475e-16, 1.599387399e-11 MLMG: Timers: Solve = 0.034566639 Iter = 0.033038639 Bottom = 0.003374351 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003894013591 MLMG: Initial residual (resid0) = 0.003894013591 MLMG: Final Iter. 8 resid, resid/bnorm = 1.490994828e-15, 3.828940996e-13 MLMG: Timers: Solve = 0.050203553 Iter = 0.048651453 Bottom = 0.00223022 Done calling nodal solver Timestep 2 ends with TIME = 0.000127886553 DT = 6.698819445e-05 Timing summary: Advection :0.070932036 seconds MAC Proj :0.072093963 seconds Nodal Proj :0.055977394 seconds Reactions :0.00381254 seconds Misc :0.012872521 seconds Base State :0.0004049010001 seconds Time to advance time step: 0.216024809 Call to estdt for level 0 gives dt_lev = 0.3130286362 Minimum estdt over all levels = 0.3130286362 Call to estdt at beginning of step 3 gives dt =0.3130286362 dt_growth factor limits the new dt = 7.36870139e-05  Timestep 3 starts with TIME = 0.000127886553 DT = 7.36870139e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.168800511e-05 MLMG: Initial residual (resid0) = 3.168800511e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 5.650700787e-16, 1.783230205e-11 MLMG: Timers: Solve = 0.034645832 Iter = 0.033157655 Bottom = 0.00356112 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.178722337e-05 MLMG: Initial residual (resid0) = 1.012935749e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 6.833616179e-16, 2.149799653e-11 MLMG: Timers: Solve = 0.034471119 Iter = 0.032080101 Bottom = 0.003667963 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004283414244 MLMG: Initial residual (resid0) = 0.004283414244 MLMG: Final Iter. 8 resid, resid/bnorm = 1.614810716e-15, 3.769914894e-13 MLMG: Timers: Solve = 0.050594804 Iter = 0.049105455 Bottom = 0.002513207 Done calling nodal solver Timestep 3 ends with TIME = 0.0002015735669 DT = 7.36870139e-05 Timing summary: Advection :0.108189636 seconds MAC Proj :0.07585138 seconds Nodal Proj :0.057836475 seconds Reactions :0.005449552 seconds Misc :0.013226404 seconds Base State :0.0004328499999 seconds Time to advance time step: 0.261241441 Call to estdt for level 0 gives dt_lev = 0.3130285358 Minimum estdt over all levels = 0.3130285358 Call to estdt at beginning of step 4 gives dt =0.3130285358 dt_growth factor limits the new dt = 8.105571529e-05  Timestep 4 starts with TIME = 0.0002015735669 DT = 8.105571529e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.570538736e-05 MLMG: Initial residual (resid0) = 3.570538736e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 7.571110825e-16, 2.120439347e-11 MLMG: Timers: Solve = 0.033858907 Iter = 0.032633727 Bottom = 0.003918083 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.581452755e-05 MLMG: Initial residual (resid0) = 1.504387741e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 8.870129024e-16, 2.476684639e-11 MLMG: Timers: Solve = 0.03364805 Iter = 0.03237974 Bottom = 0.003646875 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004711755906 MLMG: Initial residual (resid0) = 0.004711755906 MLMG: Final Iter. 8 resid, resid/bnorm = 1.768550584e-15, 3.753485153e-13 MLMG: Timers: Solve = 0.050509541 Iter = 0.049071256 Bottom = 0.002520784 Done calling nodal solver Timestep 4 ends with TIME = 0.0002826292822 DT = 8.105571529e-05 Timing summary: Advection :0.065079699 seconds MAC Proj :0.07348412 seconds Nodal Proj :0.055850911 seconds Reactions :0.004202546 seconds Misc :0.030549105 seconds Base State :0.0008188130005 seconds Time to advance time step: 0.229503425 Call to estdt for level 0 gives dt_lev = 0.313028505 Minimum estdt over all levels = 0.313028505 Call to estdt at beginning of step 5 gives dt =0.313028505 dt_growth factor limits the new dt = 8.916128682e-05  Timestep 5 starts with TIME = 0.0002826292822 DT = 8.916128682e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 4.013180326e-05 MLMG: Initial residual (resid0) = 4.013180326e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 9.681425651e-16, 2.412407334e-11 MLMG: Timers: Solve = 0.033802103 Iter = 0.032512169 Bottom = 0.003896039 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 4.025185748e-05 MLMG: Initial residual (resid0) = 2.044985444e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 1.111036176e-15, 2.760210946e-11 MLMG: Timers: Solve = 0.033508092 Iter = 0.032256582 Bottom = 0.003687136 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.005182931901 MLMG: Initial residual (resid0) = 0.005182931901 MLMG: Final Iter. 8 resid, resid/bnorm = 1.942022931e-15, 3.746958224e-13 MLMG: Timers: Solve = 0.05060476 Iter = 0.04912441 Bottom = 0.002505807 Done calling nodal solver Timestep 5 ends with TIME = 0.000371790569 DT = 8.916128682e-05 Timing summary: Advection :0.063939611 seconds MAC Proj :0.07320052 seconds Nodal Proj :0.055928788 seconds Reactions :0.002565875 seconds Misc :0.009981395 seconds Base State :0.0003561419996 seconds Time to advance time step: 0.205933144 Writing plotfile 5 Time to write plotfile: 0.036391033 Total Time: 1.679559181 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [RT_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (26.03-91-gf546b598fb75) finalized