Initializing AMReX (26.08-21-g3b31af42a8b8)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.08-21-g3b31af42a8b8) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble-2d_pltInitData after InitData inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.276765263 inner sponge: r_sp , r_tp : 186468750, 224718750 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.001899312 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-2d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.298385728 Call to firstdt for level 0 gives dt_lev = 0.0004741796958 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741796958 Minimum firstdt over all levels = 0.0004741796958 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 9721.075292 MLMG: Initial residual (resid0) = 9721.075292 MLMG: Final Iter. 5 resid, resid/bnorm = 2.785615106e-05, 2.865542157e-09 MLMG: Timers: Solve = 0.038986066 Iter = 0.033948398 Bottom = 0.001663112 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1640874127 Minimum estdt over all levels = 0.1640874127 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1640874127 Multiplying dt by init_shrink; dt = 0.1640874127 Ignoring this new dt since it's larger than the previous dt = 0.0004741796958 Writing plotfile reacting_bubble-2d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.258084529 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0004741796958 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3039467.923 MLMG: Initial residual (resid0) = 3039467.923 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002117201782, 6.965698719e-11 MLMG: Timers: Solve = 0.034452453 Iter = 0.030652786 Bottom = 0.004102622 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3039465.377 MLMG: Initial residual (resid0) = 12702.29496 MLMG: Final Iter. 4 resid, resid/bnorm = 0.0001906892837, 6.273777133e-11 MLMG: Timers: Solve = 0.018963569 Iter = 0.015085246 Bottom = 0.001711526 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.286261402e+10 MLMG: Initial residual (resid0) = 1.286261402e+10 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0006438195705, 5.005355594e-14 MLMG: Timers: Solve = 0.055775818 Iter = 0.053869662 Bottom = 0.002708985 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741796958 DT = 0.0004741796958 Timing summary: Advection :0.142372187 seconds MAC Proj :0.062456827 seconds Nodal Proj :0.069631281 seconds Reactions :0.40636501 seconds Misc :0.072647479 seconds Base State :0.0005546390003 seconds Time to advance time step: 0.765538379 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.256765575 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0004741796958 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 833900.7098 MLMG: Initial residual (resid0) = 833900.7098 MLMG: Final Iter. 7 resid, resid/bnorm = 8.080436504e-05, 9.689926402e-11 MLMG: Timers: Solve = 0.030900546 Iter = 0.026617537 Bottom = 0.003456259 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 833900.67 MLMG: Initial residual (resid0) = 1.478931399 MLMG: Final Iter. 4 resid, resid/bnorm = 4.254066357e-05, 5.10140657e-11 MLMG: Timers: Solve = 0.017429492 Iter = 0.014693115 Bottom = 0.001402109 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6099195.993 MLMG: Initial residual (resid0) = 6099195.993 MLMG: Final Iter. 8 resid, resid/bnorm = 2.882807166e-07, 4.726536366e-14 MLMG: Timers: Solve = 0.055298529 Iter = 0.053500445 Bottom = 0.002604768 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741796958 DT = 0.0004741796958 Timing summary: Advection :0.139327559 seconds MAC Proj :0.05567451 seconds Nodal Proj :0.069017839 seconds Reactions :0.410955928 seconds Misc :0.061757233 seconds Base State :0.000518396 seconds Time to advance time step: 0.747134722 Call to estdt for level 0 gives dt_lev = 0.2283219495 Minimum estdt over all levels = 0.2283219495 Call to estdt at beginning of step 2 gives dt =0.2283219495 dt_growth factor limits the new dt = 0.0005215976653  Timestep 2 starts with TIME = 0.0004741796958 DT = 0.0005215976653 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 910937.2256 MLMG: Initial residual (resid0) = 910937.2256 MLMG: Final Iter. 7 resid, resid/bnorm = 8.861509116e-05, 9.72790316e-11 MLMG: Timers: Solve = 0.030426722 Iter = 0.026808058 Bottom = 0.003271757 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 910943.1296 MLMG: Initial residual (resid0) = 4850.38368 MLMG: Final Iter. 6 resid, resid/bnorm = 2.823451759e-05, 3.099481919e-11 MLMG: Timers: Solve = 0.02582421 Iter = 0.022481976 Bottom = 0.002281318 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6722905.404 MLMG: Initial residual (resid0) = 6722905.404 MLMG: Final Iter. 8 resid, resid/bnorm = 2.749438863e-07, 4.089658709e-14 MLMG: Timers: Solve = 0.05532582 Iter = 0.053564819 Bottom = 0.002592734 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957773611 DT = 0.0005215976653 Timing summary: Advection :0.126565096 seconds MAC Proj :0.063696096 seconds Nodal Proj :0.068948229 seconds Reactions :0.412197506 seconds Misc :0.062545534 seconds Base State :0.000557329 seconds Time to advance time step: 0.734263359 Call to estdt for level 0 gives dt_lev = 0.2283888372 Minimum estdt over all levels = 0.2283888372 Call to estdt at beginning of step 3 gives dt =0.2283888372 dt_growth factor limits the new dt = 0.0005737574319  Timestep 3 starts with TIME = 0.0009957773611 DT = 0.0005737574319 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1016966.589 MLMG: Initial residual (resid0) = 1016966.589 MLMG: Final Iter. 7 resid, resid/bnorm = 9.763454949e-05, 9.600566087e-11 MLMG: Timers: Solve = 0.030447984 Iter = 0.026767531 Bottom = 0.003262676 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1016973.082 MLMG: Initial residual (resid0) = 4440.004908 MLMG: Final Iter. 6 resid, resid/bnorm = 2.491620962e-05, 2.450036295e-11 MLMG: Timers: Solve = 0.024784435 Iter = 0.022477334 Bottom = 0.002370949 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7395260.911 MLMG: Initial residual (resid0) = 7395260.911 MLMG: Final Iter. 8 resid, resid/bnorm = 3.827735782e-07, 5.175930678e-14 MLMG: Timers: Solve = 0.055248755 Iter = 0.053468334 Bottom = 0.002567692 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534793 DT = 0.0005737574319 Timing summary: Advection :0.124541533 seconds MAC Proj :0.062021853 seconds Nodal Proj :0.069029451 seconds Reactions :0.410460588 seconds Misc :0.062754859 seconds Base State :0.0005508299998 seconds Time to advance time step: 0.730508185 Writing plotfile 3 inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.275698335 Total Time: 5.758262479 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-2d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (26.08-21-g3b31af42a8b8) finalized