Initializing AMReX (26.08-35-g5b16e49d070e)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.08-35-g5b16e49d070e) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble-2d_pltInitData after InitData inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.318527525 inner sponge: r_sp , r_tp : 186468750, 224718750 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.003248852 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-2d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.304322756 Call to firstdt for level 0 gives dt_lev = 0.0004741796958 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741796958 Minimum firstdt over all levels = 0.0004741796958 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 9721.075292 MLMG: Initial residual (resid0) = 9721.075292 MLMG: Final Iter. 5 resid, resid/bnorm = 2.785615106e-05, 2.865542157e-09 MLMG: Timers: Solve = 0.038919779 Iter = 0.033767381 Bottom = 0.001552114 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1640874127 Minimum estdt over all levels = 0.1640874127 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1640874127 Multiplying dt by init_shrink; dt = 0.1640874127 Ignoring this new dt since it's larger than the previous dt = 0.0004741796958 Writing plotfile reacting_bubble-2d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.262663887 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0004741796958 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3039467.923 MLMG: Initial residual (resid0) = 3039467.923 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0002117201782, 6.965698719e-11 MLMG: Timers: Solve = 0.033279073 Iter = 0.029853258 Bottom = 0.00391348 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3039465.377 MLMG: Initial residual (resid0) = 12702.29496 MLMG: Final Iter. 4 resid, resid/bnorm = 0.0001906892837, 6.273777133e-11 MLMG: Timers: Solve = 0.018267181 Iter = 0.014822092 Bottom = 0.001632835 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.286261402e+10 MLMG: Initial residual (resid0) = 1.286261402e+10 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0006438195705, 5.005355594e-14 MLMG: Timers: Solve = 0.055209025 Iter = 0.053294517 Bottom = 0.002623335 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741796958 DT = 0.0004741796958 Timing summary: Advection :0.139557472 seconds MAC Proj :0.061294582 seconds Nodal Proj :0.069142844 seconds Reactions :0.391807737 seconds Misc :0.072814956 seconds Base State :0.0005980529995 seconds Time to advance time step: 0.746419465 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.258162956 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0004741796958 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 833900.7098 MLMG: Initial residual (resid0) = 833900.7098 MLMG: Final Iter. 7 resid, resid/bnorm = 8.080436504e-05, 9.689926402e-11 MLMG: Timers: Solve = 0.029800293 Iter = 0.026157017 Bottom = 0.003418158 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 833900.67 MLMG: Initial residual (resid0) = 1.478931399 MLMG: Final Iter. 4 resid, resid/bnorm = 4.254066357e-05, 5.10140657e-11 MLMG: Timers: Solve = 0.016886888 Iter = 0.014307521 Bottom = 0.001378795 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6099195.993 MLMG: Initial residual (resid0) = 6099195.993 MLMG: Final Iter. 8 resid, resid/bnorm = 2.882807166e-07, 4.726536366e-14 MLMG: Timers: Solve = 0.052386633 Iter = 0.050757619 Bottom = 0.001877975 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741796958 DT = 0.0004741796958 Timing summary: Advection :0.134387588 seconds MAC Proj :0.054833965 seconds Nodal Proj :0.06656547 seconds Reactions :0.385151702 seconds Misc :0.062806243 seconds Base State :0.0005423029993 seconds Time to advance time step: 0.7148765 Call to estdt for level 0 gives dt_lev = 0.2283219495 Minimum estdt over all levels = 0.2283219495 Call to estdt at beginning of step 2 gives dt =0.2283219495 dt_growth factor limits the new dt = 0.0005215976653  Timestep 2 starts with TIME = 0.0004741796958 DT = 0.0005215976653 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 910937.2256 MLMG: Initial residual (resid0) = 910937.2256 MLMG: Final Iter. 7 resid, resid/bnorm = 8.861509116e-05, 9.72790316e-11 MLMG: Timers: Solve = 0.027818249 Iter = 0.024618127 Bottom = 0.002300512 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 910943.1296 MLMG: Initial residual (resid0) = 4850.38368 MLMG: Final Iter. 6 resid, resid/bnorm = 2.823451759e-05, 3.099481919e-11 MLMG: Timers: Solve = 0.022220057 Iter = 0.020238458 Bottom = 0.001632531 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6722905.404 MLMG: Initial residual (resid0) = 6722905.404 MLMG: Final Iter. 8 resid, resid/bnorm = 2.749438863e-07, 4.089658709e-14 MLMG: Timers: Solve = 0.05199445 Iter = 0.050297301 Bottom = 0.001866783 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957773611 DT = 0.0005215976653 Timing summary: Advection :0.127878633 seconds MAC Proj :0.057192329 seconds Nodal Proj :0.065514148 seconds Reactions :0.391300343 seconds Misc :0.062477142 seconds Base State :0.0005468890004 seconds Time to advance time step: 0.705898254 Call to estdt for level 0 gives dt_lev = 0.2283888372 Minimum estdt over all levels = 0.2283888372 Call to estdt at beginning of step 3 gives dt =0.2283888372 dt_growth factor limits the new dt = 0.0005737574319  Timestep 3 starts with TIME = 0.0009957773611 DT = 0.0005737574319 Cell Count: Level 0, 245760 cells inner sponge: r_sp , r_tp : 186468750, 224718750 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1016966.589 MLMG: Initial residual (resid0) = 1016966.589 MLMG: Final Iter. 7 resid, resid/bnorm = 9.763454949e-05, 9.600566087e-11 MLMG: Timers: Solve = 0.027797794 Iter = 0.024425102 Bottom = 0.00230003 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1016973.082 MLMG: Initial residual (resid0) = 4440.004908 MLMG: Final Iter. 6 resid, resid/bnorm = 2.491620962e-05, 2.450036295e-11 MLMG: Timers: Solve = 0.022258147 Iter = 0.020268336 Bottom = 0.001717925 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7395260.911 MLMG: Initial residual (resid0) = 7395260.911 MLMG: Final Iter. 8 resid, resid/bnorm = 3.827735782e-07, 5.175930678e-14 MLMG: Timers: Solve = 0.051863985 Iter = 0.050087579 Bottom = 0.001888625 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534793 DT = 0.0005737574319 Timing summary: Advection :0.128095308 seconds MAC Proj :0.057325565 seconds Nodal Proj :0.065200224 seconds Reactions :0.390648586 seconds Misc :0.062808657 seconds Base State :0.0005353290007 seconds Time to advance time step: 0.704407001 Writing plotfile 3 inner sponge: r_sp , r_tp : 186468750, 224718750 Time to write plotfile: 0.282707059 Total Time: 5.76728895 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-2d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] AMReX (26.08-35-g5b16e49d070e) finalized