Initializing AMReX (26.09-11-gae079342654b)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.09-11-gae079342654b) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble-3d-amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.354853539 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.00417935 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-3d-amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.287789814 Call to firstdt for level 0 gives dt_lev = 0.001900185702 Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702 Call to firstdt for level 1 gives dt_lev = 0.001145985589 Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589 Call to firstdt for level 2 gives dt_lev = 0.0005809423507 Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507 Minimum firstdt over all levels = 0.0005809423507 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 3375.753789 MLMG: Initial residual (resid0) = 3375.753789 MLMG: Final Iter. 7 resid, resid/bnorm = 2.235685584e-07, 6.622774419e-11 MLMG: Timers: Solve = 0.178080985 Iter = 0.173200722 Bottom = 0.011383222 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3446506058 Call to estdt for level 1 gives dt_lev = 0.2371958412 Call to estdt for level 2 gives dt_lev = 0.166684761 Minimum estdt over all levels = 0.166684761 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761 Multiplying dt by init_shrink; dt = 0.166684761 Ignoring this new dt since it's larger than the previous dt = 0.0005809423507 Writing plotfile reacting_bubble-3d-amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.276694787 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3473324.294 MLMG: Initial residual (resid0) = 3473324.294 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037175, 5.865202403e-10 MLMG: Timers: Solve = 0.066714757 Iter = 0.06261829 Bottom = 0.017349987 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3473321.253 MLMG: Initial residual (resid0) = 152.3725381 MLMG: Final Iter. 3 resid, resid/bnorm = 0.007682688786, 2.211914254e-09 MLMG: Timers: Solve = 0.03078212 Iter = 0.026803173 Bottom = 0.00650385 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.202681384e+10 MLMG: Initial residual (resid0) = 1.202681384e+10 MLMG: Final Iter. 9 resid, resid/bnorm = 0.1560584307, 1.29758748e-11 MLMG: Timers: Solve = 0.224033771 Iter = 0.220337935 Bottom = 0.015618079 Done calling nodal solver Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.439803352 seconds MAC Proj :0.118036866 seconds Nodal Proj :0.257225834 seconds Reactions :0.385841359 seconds Misc :0.087410295 seconds Base State :0.004417855 seconds Time to advance time step: 1.303802309 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.280166143 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 807172.7037 MLMG: Initial residual (resid0) = 807172.7037 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005742968759, 7.114919437e-09 MLMG: Timers: Solve = 0.051523577 Iter = 0.048254731 Bottom = 0.011877622 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 807172.7215 MLMG: Initial residual (resid0) = 0.8173206541 MLMG: Final Iter. 2 resid, resid/bnorm = 0.0002824780968, 3.499599147e-10 MLMG: Timers: Solve = 0.019948557 Iter = 0.016744576 Bottom = 0.004034157 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6986896.692 MLMG: Initial residual (resid0) = 6986896.692 MLMG: Final Iter. 9 resid, resid/bnorm = 9.066256462e-05, 1.297608489e-11 MLMG: Timers: Solve = 0.211353615 Iter = 0.208088397 Bottom = 0.013199719 Done calling nodal solver Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.404365536 seconds MAC Proj :0.090260718 seconds Nodal Proj :0.238617714 seconds Reactions :0.395036841 seconds Misc :0.08270619 seconds Base State :0.004525778 seconds Time to advance time step: 1.229411629 Call to estdt for level 0 gives dt_lev = 0.4121759496 Call to estdt for level 1 gives dt_lev = 0.2828508339 Call to estdt for level 2 gives dt_lev = 0.198551117 Minimum estdt over all levels = 0.198551117 Call to estdt at beginning of step 2 gives dt =0.198551117 dt_growth factor limits the new dt = 0.0006390365858  Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 862408.7998 MLMG: Initial residual (resid0) = 862408.7998 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005906955688, 6.849368524e-09 MLMG: Timers: Solve = 0.053266457 Iter = 0.049937131 Bottom = 0.014200944 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 862410.8019 MLMG: Initial residual (resid0) = 10430.26042 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001076973491, 1.248794065e-09 MLMG: Timers: Solve = 0.034421961 Iter = 0.031185462 Bottom = 0.007148465 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7717168.571 MLMG: Initial residual (resid0) = 7717168.571 MLMG: Final Iter. 9 resid, resid/bnorm = 9.889237117e-05, 1.281459259e-11 MLMG: Timers: Solve = 0.209718681 Iter = 0.206522421 Bottom = 0.012826732 Done calling nodal solver Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858 Timing summary: Advection :0.399675257 seconds MAC Proj :0.105982917 seconds Nodal Proj :0.236322577 seconds Reactions :0.391663029 seconds Misc :0.081785332 seconds Base State :0.004245784 seconds Time to advance time step: 1.218538597 Call to estdt for level 0 gives dt_lev = 0.412322209 Call to estdt for level 1 gives dt_lev = 0.2829378846 Call to estdt for level 2 gives dt_lev = 0.1986205604 Minimum estdt over all levels = 0.1986205604 Call to estdt at beginning of step 3 gives dt =0.1986205604 dt_growth factor limits the new dt = 0.0007029402444  Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 978885.4037 MLMG: Initial residual (resid0) = 978885.4037 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006844884367, 6.992528789e-09 MLMG: Timers: Solve = 0.052234344 Iter = 0.048975066 Bottom = 0.01322661 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 978885.8232 MLMG: Initial residual (resid0) = 1095.718137 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084104786, 1.107488494e-09 MLMG: Timers: Solve = 0.03502604 Iter = 0.031811916 Bottom = 0.006845042 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 8489041.657 MLMG: Initial residual (resid0) = 8489041.657 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001069753198, 1.260157791e-11 MLMG: Timers: Solve = 0.208250505 Iter = 0.205039916 Bottom = 0.013171336 Done calling nodal solver Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444 Timing summary: Advection :0.402171298 seconds MAC Proj :0.105798424 seconds Nodal Proj :0.234915433 seconds Reactions :0.392445197 seconds Misc :0.082772419 seconds Base State :0.004204588 seconds Time to advance time step: 1.220791668 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.279853194 Total Time: 8.114182518 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d-amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] AMReX (26.09-11-gae079342654b) finalized