Initializing AMReX (26.09-13-gb105892be1b2)... MPI initialized with 4 MPI processes MPI initialized with thread support level 0 OMP initialized with 4 OMP threads AMReX (26.09-13-gb105892be1b2) initialized Calling Setup() Calling ReadParameters() reading extern runtime parameters ... Calling VariableSetup() Calling BCSetup() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 2250000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 91 radius at r_cutoff 205875000 Maximum HSE Error = 0.006358 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 1 dr of MAESTRO base state = 1125000.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 182 radius at r_cutoff 205312500 Maximum HSE Error = 0.001719 (after putting initial model into base state arrays, and for density < base_cutoff_density) model file mapping, level: 2 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble-3d-amr_pltInitData after InitData inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.346264975 inner sponge: r_sp , r_tp : 187875000, 223875000 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.005531834 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-3d-amr_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.281588762 Call to firstdt for level 0 gives dt_lev = 0.001900185702 Multiplying dt_lev by init_shrink; dt_lev = 0.001900185702 Call to firstdt for level 1 gives dt_lev = 0.001145985589 Multiplying dt_lev by init_shrink; dt_lev = 0.001145985589 Call to firstdt for level 2 gives dt_lev = 0.0005809423507 Multiplying dt_lev by init_shrink; dt_lev = 0.0005809423507 Minimum firstdt over all levels = 0.0005809423507 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 3375.753789 MLMG: Initial residual (resid0) = 3375.753789 MLMG: Final Iter. 8 resid, resid/bnorm = 3.888462786e-08, 1.151879856e-11 MLMG: Timers: Solve = 0.184905806 Iter = 0.18016082 Bottom = 0.010976306 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.3446506058 Call to estdt for level 1 gives dt_lev = 0.2371958412 Call to estdt for level 2 gives dt_lev = 0.166684761 Minimum estdt over all levels = 0.166684761 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.166684761 Multiplying dt by init_shrink; dt = 0.166684761 Ignoring this new dt since it's larger than the previous dt = 0.0005809423507 Writing plotfile reacting_bubble-3d-amr_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.281861236 Doing initial pressure iteration #1  Timestep 0 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3473324.294 MLMG: Initial residual (resid0) = 3473324.294 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002037180588, 5.865218492e-10 MLMG: Timers: Solve = 0.06605662 Iter = 0.061838225 Bottom = 0.014290456 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3473321.253 MLMG: Initial residual (resid0) = 152.3725369 MLMG: Final Iter. 3 resid, resid/bnorm = 0.007682705603, 2.211919095e-09 MLMG: Timers: Solve = 0.031617462 Iter = 0.027400911 Bottom = 0.006003709 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.202681384e+10 MLMG: Initial residual (resid0) = 1.202681384e+10 MLMG: Final Iter. 9 resid, resid/bnorm = 0.1904447079, 1.58350092e-11 MLMG: Timers: Solve = 0.213860806 Iter = 0.210197799 Bottom = 0.013627749 Done calling nodal solver Timestep 0 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.451235727 seconds MAC Proj :0.119828937 seconds Nodal Proj :0.248343141 seconds Reactions :0.38484852 seconds Misc :0.091975812 seconds Base State :0.004580702 seconds Time to advance time step: 1.311013779 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.298047263 Beginning main evolution  Timestep 1 starts with TIME = 0 DT = 0.0005809423507 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1593952.754 MLMG: Initial residual (resid0) = 1593952.754 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006032023346, 3.784317528e-09 MLMG: Timers: Solve = 0.056920128 Iter = 0.053173334 Bottom = 0.013929288 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1593952.784 MLMG: Initial residual (resid0) = 0.8173216606 MLMG: Final Iter. 1 resid, resid/bnorm = 0.008522493961, 5.346766884e-09 MLMG: Timers: Solve = 0.01375695 Iter = 0.009940316 Bottom = 0.002474768 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6986896.708 MLMG: Initial residual (resid0) = 6986896.708 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001106363488, 1.58348339e-11 MLMG: Timers: Solve = 0.2068488 Iter = 0.203348976 Bottom = 0.01308446 Done calling nodal solver Timestep 1 ends with TIME = 0.0005809423507 DT = 0.0005809423507 Timing summary: Advection :0.419984768 seconds MAC Proj :0.090340769 seconds Nodal Proj :0.235063474 seconds Reactions :0.386473625 seconds Misc :0.11727932 seconds Base State :0.004896993 seconds Time to advance time step: 1.267807795 Call to estdt for level 0 gives dt_lev = 0.412175951 Call to estdt for level 1 gives dt_lev = 0.2828508348 Call to estdt for level 2 gives dt_lev = 0.1985511177 Minimum estdt over all levels = 0.1985511177 Call to estdt at beginning of step 2 gives dt =0.1985511177 dt_growth factor limits the new dt = 0.0006390365858  Timestep 2 starts with TIME = 0.0005809423507 DT = 0.0006390365858 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 862408.8759 MLMG: Initial residual (resid0) = 862408.8759 MLMG: Final Iter. 6 resid, resid/bnorm = 0.005905300961, 6.847449193e-09 MLMG: Timers: Solve = 0.056017564 Iter = 0.052238923 Bottom = 0.013153081 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 862410.8781 MLMG: Initial residual (resid0) = 10430.25526 MLMG: Final Iter. 4 resid, resid/bnorm = 0.00107696138, 1.248779912e-09 MLMG: Timers: Solve = 0.03757228 Iter = 0.033741592 Bottom = 0.00709944 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 7717168.58 MLMG: Initial residual (resid0) = 7717168.58 MLMG: Final Iter. 9 resid, resid/bnorm = 0.0001205980079, 1.562723513e-11 MLMG: Timers: Solve = 0.207813514 Iter = 0.204293495 Bottom = 0.013196145 Done calling nodal solver Timestep 2 ends with TIME = 0.001219978937 DT = 0.0006390365858 Timing summary: Advection :0.401411645 seconds MAC Proj :0.11306705 seconds Nodal Proj :0.235782963 seconds Reactions :0.381205134 seconds Misc :0.077847011 seconds Base State :0.00459502 seconds Time to advance time step: 1.211875338 Call to estdt for level 0 gives dt_lev = 0.4123222102 Call to estdt for level 1 gives dt_lev = 0.2829378855 Call to estdt for level 2 gives dt_lev = 0.198620561 Minimum estdt over all levels = 0.198620561 Call to estdt at beginning of step 3 gives dt =0.198620561 dt_growth factor limits the new dt = 0.0007029402444  Timestep 3 starts with TIME = 0.001219978937 DT = 0.0007029402444 Cell Count: Level 0, 32768 cells Level 1, 24576 cells Level 2, 131072 cells inner sponge: r_sp , r_tp : 187875000, 223875000 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 978885.4093 MLMG: Initial residual (resid0) = 978885.4093 MLMG: Final Iter. 6 resid, resid/bnorm = 0.006845343392, 6.992997676e-09 MLMG: Timers: Solve = 0.057112272 Iter = 0.053255364 Bottom = 0.014091962 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 978885.8288 MLMG: Initial residual (resid0) = 1095.742861 MLMG: Final Iter. 4 resid, resid/bnorm = 0.001084096628, 1.107480153e-09 MLMG: Timers: Solve = 0.037787872 Iter = 0.03400901 Bottom = 0.006680757 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 8489041.685 MLMG: Initial residual (resid0) = 8489041.685 MLMG: Final Iter. 9 resid, resid/bnorm = 0.000130710192, 1.539752034e-11 MLMG: Timers: Solve = 0.215567362 Iter = 0.21211083 Bottom = 0.01285853 Done calling nodal solver Timestep 3 ends with TIME = 0.001922919181 DT = 0.0007029402444 Timing summary: Advection :0.401234797 seconds MAC Proj :0.114238655 seconds Nodal Proj :0.249312779 seconds Reactions :0.38067009 seconds Misc :0.078976026 seconds Base State :0.004536031 seconds Time to advance time step: 1.226725288 Writing plotfile 3 inner sponge: r_sp , r_tp : 187875000, 223875000 Time to write plotfile: 0.284817273 Total Time: 8.174218092 Unused ParmParse Variables: [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d-amr_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] AMReX (26.09-13-gb105892be1b2) finalized