Initializing CUDA...
CUDA initialized with 1 GPU
AMReX (19.12-73-g6da97bf2e883) initialized
Calling Setup()
Calling ReadParameters()
WARNING: burning_cutoff_density not supplied in the inputs file
WARNING: setting burning_cutoff_density = base_cutoff_density
reading extern runtime parameters ...
ERROR: problem in the namelist
Calling VariableSetup()
Calling set_method_params()
Initializing Helmholtz EOS and using Coulomb corrections.
Calling BCSetup()
Calling init_base_state_geometry()
Calling Init()
Calling InitData()
------------------------------------------------------------------------------
reading initial model
640 points found in the initial model file
6 variables found in the initial model file
------------------------------------------------------------------------------
model file mapping, level: 0
dr of MAESTRO base state = 562500.0000
dr of input file data = 562500.0000
maximum radius (cell-centered) of input model = 359718750.0
setting r_cutoff to 365
radius at r_cutoff 205593750.0000000
Maximum HSE Error = 0.6051370840E-04
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
------------------------------------------------------------------------------
------------------------------------------------------------------------------
model file mapping, level: 1
dr of MAESTRO base state = 281250.0000
dr of input file data = 562500.0000
maximum radius (cell-centered) of input model = 359718750.0
Maximum HSE Error = 0.5009359532
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
------------------------------------------------------------------------------
Writing plotfile reacting_bubble-2d-amr_pltInitData after InitData
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.434307536
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Doing initial projection
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.011593483 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-2d-amr_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.291572373
Call to firstdt for level 0 gives dt_lev = 0.0004741795922
Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795922
Call to firstdt for level 1 gives dt_lev = 0.0002743178815
Multiplying dt_lev by init_shrink; dt_lev = 0.0002743178815
Minimum firstdt over all levels = 0.0002743178815
Doing initial divu iteration #1
Calling nodal solver
MLMG: Initial rhs = 9701.829892
MLMG: Initial residual (resid0) = 9701.829892
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0003239995866, 3.339571918e-08
MLMG: Timers: Solve = 0.428352119 Iter = 0.417443923 Bottom = 0.001360068
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.1641628699
Call to estdt for level 1 gives dt_lev = 0.1158500464
Minimum estdt over all levels = 0.1158500464
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1158500464
Multiplying dt by init_shrink; dt = 0.1158500464
Ignoring this new dt since it's larger than the previous dt = 0.0002743178815
Writing plotfile reacting_bubble-2d-amr_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.306141808
Doing initial pressure iteration #1
Timestep 0 starts with TIME = 0 DT = 0.0002743178815
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1769558.576
MLMG: Initial residual (resid0) = 1769558.576
MLMG: Final Iter. 7 resid, resid/bnorm = 0.001462890554, 8.266980101e-10
MLMG: Timers: Solve = 0.222344637 Iter = 0.203826866 Bottom = 0.00289059
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1769557.101
MLMG: Initial residual (resid0) = 12562.98253
MLMG: Final Iter. 4 resid, resid/bnorm = 0.0003393788775, 1.917874689e-10
MLMG: Timers: Solve = 0.131882409 Iter = 0.117151007 Bottom = 0.001431711
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.293088754e+10
MLMG: Initial residual (resid0) = 1.293088754e+10
MLMG: Final Iter. 9 resid, resid/bnorm = 0.05354690552, 4.141007749e-12
MLMG: Timers: Solve = 0.761514503 Iter = 0.74868226 Bottom = 0.002529356
Done calling nodal solver
Timestep 0 ends with TIME = 0.0002743178815 DT = 0.0002743178815
Timing summary:
Advection :0.965934021 seconds
MAC Proj :0.428360737 seconds
Nodal Proj :0.833835853 seconds
Reactions :0.093183575 seconds
Misc :0.032737617 seconds
Base State :0.005402655 seconds
Time to advance time step: 2.354337211
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.30236575
Writing checkpoint 0 after all initialization
Writing checkpoint reacting_bubble_2d_chk0000000
Calling Evolve()
Timestep 1 starts with TIME = 0 DT = 0.0002743178815
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 484084.2375
MLMG: Initial residual (resid0) = 484084.2375
MLMG: Final Iter. 7 resid, resid/bnorm = 3.840944833e-05, 7.934455484e-11
MLMG: Timers: Solve = 0.223797322 Iter = 0.205688992 Bottom = 0.00283636
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 484084.2269
MLMG: Initial residual (resid0) = 31.47969785
MLMG: Final Iter. 3 resid, resid/bnorm = 0.0002703533003, 5.584840102e-10
MLMG: Timers: Solve = 0.107398871 Iter = 0.090998343 Bottom = 0.001191471
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 3547174.998
MLMG: Initial residual (resid0) = 3547174.998
MLMG: Final Iter. 9 resid, resid/bnorm = 1.471117139e-05, 4.147292253e-12
MLMG: Timers: Solve = 0.762706985 Iter = 0.749841916 Bottom = 0.002637356
Done calling nodal solver
Timestep 1 ends with TIME = 0.0002743178815 DT = 0.0002743178815
Timing summary:
Advection :0.948984653 seconds
MAC Proj :0.401461371 seconds
Nodal Proj :0.836295349 seconds
Reactions :0.088391903 seconds
Misc :0.034597163 seconds
Base State :0.00582593 seconds
Time to advance time step: 2.310085401
Call to estdt for level 0 gives dt_lev = 0.2285161775
Call to estdt for level 1 gives dt_lev = 0.1613599181
Minimum estdt over all levels = 0.1613599181
Timestep 2 starts with TIME = 0.0002743178815 DT = 0.0003017496696
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 709087.2124
MLMG: Initial residual (resid0) = 709087.2124
MLMG: Final Iter. 6 resid, resid/bnorm = 0.0005371488874, 7.575216108e-10
MLMG: Timers: Solve = 0.18951369 Iter = 0.174772425 Bottom = 0.002500147
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 709086.6267
MLMG: Initial residual (resid0) = 129230.7287
MLMG: Final Iter. 5 resid, resid/bnorm = 9.598452993e-05, 1.353636161e-10
MLMG: Timers: Solve = 0.210942585 Iter = 0.193763093 Bottom = 0.002576616
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 3903892.245
MLMG: Initial residual (resid0) = 3903892.245
MLMG: Final Iter. 9 resid, resid/bnorm = 1.62050128e-05, 4.150988752e-12
MLMG: Timers: Solve = 0.767695622 Iter = 0.754714274 Bottom = 0.002855816
Done calling nodal solver
Timestep 2 ends with TIME = 0.0005760675511 DT = 0.0003017496696
Timing summary:
Advection :0.979259316 seconds
MAC Proj :0.474726528 seconds
Nodal Proj :0.839806792 seconds
Reactions :0.081931122 seconds
Misc :0.037869875 seconds
Base State :0.005851425 seconds
Time to advance time step: 2.413948671
Time to regrid: 0.027841452
Call to estdt for level 0 gives dt_lev = 0.2285277613
Call to estdt for level 1 gives dt_lev = 0.1613799431
Minimum estdt over all levels = 0.1613799431
Timestep 3 starts with TIME = 0.0005760675511 DT = 0.0003319246366
Cell Count:
Level 0, 245760 cells
Level 1, 79872 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1070293.284
MLMG: Initial residual (resid0) = 1070293.284
MLMG: Final Iter. 6 resid, resid/bnorm = 0.0005794052904, 5.413518885e-10
MLMG: Timers: Solve = 0.189424974 Iter = 0.174813271 Bottom = 0.00262222
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1070292.64
MLMG: Initial residual (resid0) = 47909.95882
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0001413002954, 1.320202439e-10
MLMG: Timers: Solve = 0.163169139 Iter = 0.146101161 Bottom = 0.001867295
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 4294280.634
MLMG: Initial residual (resid0) = 4294280.634
MLMG: Final Iter. 9 resid, resid/bnorm = 1.785717905e-05, 4.158363314e-12
MLMG: Timers: Solve = 0.763723081 Iter = 0.75086635 Bottom = 0.002854791
Done calling nodal solver
Timestep 3 ends with TIME = 0.0009079921877 DT = 0.0003319246366
Timing summary:
Advection :0.999015525 seconds
MAC Proj :0.427733635 seconds
Nodal Proj :0.836515801 seconds
Reactions :0.083373211 seconds
Misc :0.039736589 seconds
Base State :0.006489291 seconds
Time to advance time step: 2.386713391
Writing plotfile 3
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.305234611
Writing checkpoint 3
Writing checkpoint reacting_bubble_2d_chk0000003
Total Time: 21.95734137
Unused ParmParse Variables:
[TOP]::maestro.v(nvals = 1) :: [1]
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-2d-amr_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
Total GPU global memory (MB): 12066
Free GPU global memory (MB): 9958
[The Arena] space (MB): 9049
[The Device Arena] space (MB): 8
[The Managed Arena] space (MB): 8
[The Pinned Arena] space (MB): 8
AMReX (19.12-73-g6da97bf2e883) finalized