Initializing CUDA...
CUDA initialized with 1 GPU
AMReX (19.12-110-g14ef2853dd8f) initialized
Calling Setup()
Calling ReadParameters()
 WARNING: burning_cutoff_density_lo not supplied in the inputs file
 WARNING: setting burning_cutoff_density_lo = base_cutoff_density
reading extern runtime parameters ...
 ERROR: problem in the namelist
Calling VariableSetup()
 Calling set_method_params()
Calling BCSetup()
 Calling init_base_state_geometry()
Calling Init()
Calling InitData()
------------------------------------------------------------------------------
 cutoff densities:
          low density cutoff (for mapping the model) =        0.1000000000E-09
          buoyancy cutoff density                           
              (for zeroing rho - rho_0, centrifugal term) =   0.5000000000E-09
          anelastic cutoff =                                  0.1000000000E-09
                                                            
------------------------------------------------------------------------------
  
  
 Maximum HSE Error =    4.5474735088667091E-013
    (after putting initial model into base state arrays, and
     for density < base_cutoff_density)
------------------------------------------------------------------------------
  

Writing plotfile RT_pltInitData after InitData
Time to write plotfile: 0.110722354
Doing initial projection
Calling nodal solver
MLMG: Initial rhs               = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.003592711 Iter = 0 Bottom = 0
Done calling nodal solver

Writing plotfile RT_pltafter_InitProj after InitProj
Time to write plotfile: 0.098018978
Call to firstdt for level 0 gives dt_lev = 0.000608983586
Multiplying dt_lev by init_shrink; dt_lev = 6.08983586e-05
Minimum firstdt over all levels = 6.08983586e-05
Doing initial divu iteration #1
Calling nodal solver
MLMG: Initial rhs               = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.003796609 Iter = 0 Bottom = 0
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.08660444773
Minimum estdt over all levels = 0.08660444773
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.08660444773
Multiplying dt by init_shrink; dt = 0.008660444773
Ignoring this new dt since it's larger than the previous dt = 6.08983586e-05

Writing plotfile RT_pltafter_DivuIter after final DivuIter
Time to write plotfile: 0.10107412
Doing initial pressure iteration #1

Timestep 0 starts with TIME = 0 DT = 6.08983586e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 0.002421164472
MLMG: Initial residual (resid0) = 0.002421164472
MLMG: Final Iter. 9 resid, resid/bnorm = 1.751907791e-13, 7.235806619e-11
MLMG: Timers: Solve = 0.075663249 Iter = 0.073231803 Bottom = 0.018586167
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 0.002421205691
MLMG: Initial residual (resid0) = 2.151449932e-06
MLMG: Final Iter. 7 resid, resid/bnorm = 9.927909287e-14, 4.100398955e-11
MLMG: Timers: Solve = 0.061120071 Iter = 0.055047236 Bottom = 0.013326476
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 58.12657035
MLMG: Initial residual (resid0) = 58.12657035
MLMG: Final Iter. 9 resid, resid/bnorm = 1.007727235e-11, 1.733677437e-13
MLMG: Timers: Solve = 0.101332038 Iter = 0.099306395 Bottom = 0.017539001
Done calling nodal solver

Timestep 0 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05
Timing summary:
Advection  :0.296148595 seconds
MAC Proj   :0.161540481 seconds
Nodal Proj :0.11368567 seconds
Reactions  :0.01612507 seconds
Misc       :0.009103036 seconds
Base State :0.00204449 seconds
Time to advance time step: 0.59669706

Writing plotfile 0 after all initialization
Time to write plotfile: 0.10263565
Calling Evolve()

Timestep 1 starts with TIME = 0 DT = 6.08983586e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 2.394238647e-05
MLMG: Initial residual (resid0) = 2.394238647e-05
MLMG: Final Iter. 9 resid, resid/bnorm = 3.183978284e-16, 1.329850008e-11
MLMG: Timers: Solve = 0.074043159 Iter = 0.071863913 Bottom = 0.018773039
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 2.394218844e-05
MLMG: Initial residual (resid0) = 1.928413159e-06
MLMG: Final Iter. 9 resid, resid/bnorm = 6.036509471e-16, 2.52128559e-11
MLMG: Timers: Solve = 0.07142176 Iter = 0.069207491 Bottom = 0.016291273
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 0.003539812449
MLMG: Initial residual (resid0) = 0.003539812449
MLMG: Final Iter. 9 resid, resid/bnorm = 6.095384614e-16, 1.72195129e-13
MLMG: Timers: Solve = 0.10059759 Iter = 0.098613473 Bottom = 0.017492838
Done calling nodal solver

Timestep 1 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05
Timing summary:
Advection  :0.299718429 seconds
MAC Proj   :0.167797651 seconds
Nodal Proj :0.113024624 seconds
Reactions  :0.014536821 seconds
Misc       :0.00975008 seconds
Base State :0.002037273 seconds
Time to advance time step: 0.604928405
Call to estdt for level 0 gives dt_lev = 0.3128878797
Minimum estdt over all levels = 0.3128878797

Timestep 2 starts with TIME = 6.08983586e-05 DT = 6.698819446e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 3.050043586e-05
MLMG: Initial residual (resid0) = 3.050043586e-05
MLMG: Final Iter. 9 resid, resid/bnorm = 2.284813777e-15, 7.491085661e-11
MLMG: Timers: Solve = 0.073307042 Iter = 0.071143854 Bottom = 0.018135584
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 3.059063412e-05
MLMG: Initial residual (resid0) = 5.66083759e-06
MLMG: Final Iter. 10 resid, resid/bnorm = 4.89262324e-16, 1.599386015e-11
MLMG: Timers: Solve = 0.079764854 Iter = 0.077576323 Bottom = 0.018377402
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 0.003894013591
MLMG: Initial residual (resid0) = 0.003894013591
MLMG: Final Iter. 9 resid, resid/bnorm = 6.617970061e-16, 1.69952413e-13
MLMG: Timers: Solve = 0.100638954 Iter = 0.098655148 Bottom = 0.017404493
Done calling nodal solver

Timestep 2 ends with TIME = 0.0001278865531 DT = 6.698819446e-05
Timing summary:
Advection  :0.302693853 seconds
MAC Proj   :0.176026754 seconds
Nodal Proj :0.1128352 seconds
Reactions  :0.013657031 seconds
Misc       :0.012521415 seconds
Base State :0.002188782 seconds
Time to advance time step: 0.617836188
Call to estdt for level 0 gives dt_lev = 0.3130286362
Minimum estdt over all levels = 0.3130286362

Timestep 3 starts with TIME = 0.0001278865531 DT = 7.368701391e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 3.168800512e-05
MLMG: Initial residual (resid0) = 3.168800512e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 5.650713492e-16, 1.783234215e-11
MLMG: Timers: Solve = 0.080781493 Iter = 0.078557494 Bottom = 0.019400904
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 3.178722338e-05
MLMG: Initial residual (resid0) = 1.012935749e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 6.833624649e-16, 2.149802318e-11
MLMG: Timers: Solve = 0.0792529 Iter = 0.077017604 Bottom = 0.018340696
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 0.004283414244
MLMG: Initial residual (resid0) = 0.004283414244
MLMG: Final Iter. 9 resid, resid/bnorm = 7.409437647e-16, 1.729797125e-13
MLMG: Timers: Solve = 0.10043495 Iter = 0.098513064 Bottom = 0.017402571
Done calling nodal solver

Timestep 3 ends with TIME = 0.000201573567 DT = 7.368701391e-05
Timing summary:
Advection  :0.307230912 seconds
MAC Proj   :0.183146353 seconds
Nodal Proj :0.113113869 seconds
Reactions  :0.012703402 seconds
Misc       :0.01198791 seconds
Base State :0.00240572 seconds
Time to advance time step: 0.628278387
Call to estdt for level 0 gives dt_lev = 0.3130285358
Minimum estdt over all levels = 0.3130285358

Timestep 4 starts with TIME = 0.000201573567 DT = 8.10557153e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 3.570538737e-05
MLMG: Initial residual (resid0) = 3.570538737e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 7.571102355e-16, 2.120436974e-11
MLMG: Timers: Solve = 0.080408865 Iter = 0.07820686 Bottom = 0.01939994
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 3.581452755e-05
MLMG: Initial residual (resid0) = 1.504387741e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 8.870129024e-16, 2.476684639e-11
MLMG: Timers: Solve = 0.079720936 Iter = 0.07757646 Bottom = 0.018454089
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 0.004711755907
MLMG: Initial residual (resid0) = 0.004711755907
MLMG: Final Iter. 9 resid, resid/bnorm = 8.170547572e-16, 1.734077005e-13
MLMG: Timers: Solve = 0.101952916 Iter = 0.100018539 Bottom = 0.017647437
Done calling nodal solver

Timestep 4 ends with TIME = 0.0002826292823 DT = 8.10557153e-05
Timing summary:
Advection  :0.30585825 seconds
MAC Proj   :0.182517579 seconds
Nodal Proj :0.114633936 seconds
Reactions  :0.013762785 seconds
Misc       :0.012991227 seconds
Base State :0.002176058 seconds
Time to advance time step: 0.629883484
Call to estdt for level 0 gives dt_lev = 0.313028505
Minimum estdt over all levels = 0.313028505

Timestep 5 starts with TIME = 0.0002826292823 DT = 8.916128683e-05

Cell Count:
Level 0, 131072 cells
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs               = 4.013180326e-05
MLMG: Initial residual (resid0) = 4.013180326e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 9.681425651e-16, 2.412407334e-11
MLMG: Timers: Solve = 0.082677446 Iter = 0.080448586 Bottom = 0.019809038
<<< STEP 4 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs               = 4.025185749e-05
MLMG: Initial residual (resid0) = 2.044985444e-05
MLMG: Final Iter. 10 resid, resid/bnorm = 1.111036176e-15, 2.760210946e-11
MLMG: Timers: Solve = 0.083487365 Iter = 0.081321718 Bottom = 0.018592124
<<< STEP 8 : advect base >>>
            :  density_advance >>>
            :   tracer_advance >>>
            : enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs               = 0.005182931902
MLMG: Initial residual (resid0) = 0.005182931902
MLMG: Final Iter. 9 resid, resid/bnorm = 8.990204414e-16, 1.734578919e-13
MLMG: Timers: Solve = 0.102113155 Iter = 0.100071476 Bottom = 0.017689337
Done calling nodal solver

Timestep 5 ends with TIME = 0.0003717905691 DT = 8.916128683e-05
Timing summary:
Advection  :0.303216907 seconds
MAC Proj   :0.189824809 seconds
Nodal Proj :0.114832086 seconds
Reactions  :0.012820896 seconds
Misc       :0.012292604 seconds
Base State :0.002868361 seconds
Time to advance time step: 0.63313278

Writing plotfile 5
Time to write plotfile: 0.105049306

Total Time: 4.532386872
Unused ParmParse Variables:
  [TOP]::maestro.v(nvals = 1)  :: [1]
  [TOP]::amr.ref_ratio(nvals = 4)  :: [2, 2, 2, 2]
  [TOP]::amr.check_file(nvals = 1)  :: [RT_chk]
  [TOP]::amr.checkpoint_files_output(nvals = 1)  :: [0]

Total GPU global memory (MB): 12066
Free  GPU global memory (MB): 10291
[The         Arena] space (MB): 9049
[The  Device Arena] space (MB): 8
[The Managed Arena] space (MB): 8
[The  Pinned Arena] space (MB): 8
AMReX (19.12-110-g14ef2853dd8f) finalized