Initializing CUDA...
CUDA initialized with 1 GPU
AMReX (19.12-122-g6b3e01d08ce6) initialized
Calling Setup()
Calling ReadParameters()
WARNING: burning_cutoff_density_lo not supplied in the inputs file
WARNING: setting burning_cutoff_density_lo = base_cutoff_density
reading extern runtime parameters ...
ERROR: problem in the namelist
Calling VariableSetup()
Calling set_method_params()
Initializing Helmholtz EOS and using Coulomb corrections.
Calling BCSetup()
Calling init_base_state_geometry()
Calling Init()
Calling InitData()
------------------------------------------------------------------------------
reading initial model
640 points found in the initial model file
6 variables found in the initial model file
------------------------------------------------------------------------------
model file mapping, level: 0
dr of MAESTRO base state = 562500.0000
dr of input file data = 562500.0000
maximum radius (cell-centered) of input model = 359718750.0
setting r_cutoff to 365
radius at r_cutoff 205593750.0000000
Maximum HSE Error = 0.6051370840E-04
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
------------------------------------------------------------------------------
Writing plotfile reacting_bubble-3d_pltInitData after InitData
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 1.029095234
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Doing initial projection
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.018188053 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.933519128
Call to firstdt for level 0 gives dt_lev = 0.0004741795139
Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139
Minimum firstdt over all levels = 0.0004741795139
Doing initial divu iteration #1
Calling nodal solver
MLMG: Initial rhs = 2054.812696
MLMG: Initial residual (resid0) = 2054.812696
MLMG: Final Iter. 8 resid, resid/bnorm = 8.007106089e-11, 3.896757162e-14
MLMG: Timers: Solve = 0.238836741 Iter = 0.224359097 Bottom = 0.124914353
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.1719927642
Minimum estdt over all levels = 0.1719927642
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642
Multiplying dt by init_shrink; dt = 0.1719927642
Ignoring this new dt since it's larger than the previous dt = 0.0004741795139
Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.90431426
Doing initial pressure iteration #1
Timestep 0 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 2728630.345
MLMG: Initial residual (resid0) = 2728630.345
MLMG: Final Iter. 9 resid, resid/bnorm = 2.137292176e-05, 7.832838847e-12
MLMG: Timers: Solve = 0.224372395 Iter = 0.216030689 Bottom = 0.158713886
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 2728626.155
MLMG: Initial residual (resid0) = 8729.505843
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0002248512465, 8.240456322e-11
MLMG: Timers: Solve = 0.1333286 Iter = 0.130689262 Bottom = 0.099059847
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.157552621e+10
MLMG: Initial residual (resid0) = 1.157552621e+10
MLMG: Final Iter. 8 resid, resid/bnorm = 0.0005201422609, 4.493465363e-14
MLMG: Timers: Solve = 0.215043495 Iter = 0.21206132 Bottom = 0.122361643
Done calling nodal solver
Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :2.565313616 seconds
MAC Proj :0.518447238 seconds
Nodal Proj :0.257858779 seconds
Reactions :0.214235351 seconds
Misc :0.091637126 seconds
Base State :0.003203575 seconds
Time to advance time step: 3.647610697
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.935910439
Calling Evolve()
Timestep 1 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1308193.213
MLMG: Initial residual (resid0) = 1308193.213
MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001235251257, 9.44242215e-11
MLMG: Timers: Solve = 0.215330339 Iter = 0.212644264 Bottom = 0.161547046
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1308193.247
MLMG: Initial residual (resid0) = 0.9819748219
MLMG: Final Iter. 4 resid, resid/bnorm = 3.540321268e-05, 2.706267806e-11
MLMG: Timers: Solve = 0.111229944 Iter = 0.108834421 Bottom = 0.083319564
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 5488884.015
MLMG: Initial residual (resid0) = 5488884.015
MLMG: Final Iter. 8 resid, resid/bnorm = 2.47610501e-07, 4.511126493e-14
MLMG: Timers: Solve = 0.214550288 Iter = 0.211733042 Bottom = 0.122425505
Done calling nodal solver
Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :2.500267984 seconds
MAC Proj :0.479198859 seconds
Nodal Proj :0.255532878 seconds
Reactions :0.214058769 seconds
Misc :0.085271916 seconds
Base State :0.00307795 seconds
Time to advance time step: 3.534479584
Writing plotfile 1
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.944876118
Call to estdt for level 0 gives dt_lev = 0.2012294724
Minimum estdt over all levels = 0.2012294724
Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1417785.252
MLMG: Initial residual (resid0) = 1417785.252
MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001356723224, 9.569313982e-11
MLMG: Timers: Solve = 0.206219679 Iter = 0.203676716 Bottom = 0.153357467
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1417789.529
MLMG: Initial residual (resid0) = 60994.35243
MLMG: Final Iter. 6 resid, resid/bnorm = 3.049715906e-05, 2.151035709e-11
MLMG: Timers: Solve = 0.170069873 Iter = 0.167728393 Bottom = 0.130138116
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6063790.017
MLMG: Initial residual (resid0) = 6063790.017
MLMG: Final Iter. 8 resid, resid/bnorm = 4.292023489e-07, 7.078120247e-14
MLMG: Timers: Solve = 0.205754318 Iter = 0.20290335 Bottom = 0.113481455
Done calling nodal solver
Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653
Timing summary:
Advection :2.496314276 seconds
MAC Proj :0.524887041 seconds
Nodal Proj :0.247553803 seconds
Reactions :0.207219331 seconds
Misc :0.076678098 seconds
Base State :0.003444205 seconds
Time to advance time step: 3.552806827
Writing plotfile 2
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.924166327
Call to estdt for level 0 gives dt_lev = 0.2012849721
Minimum estdt over all levels = 0.2012849721
Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1588645.934
MLMG: Initial residual (resid0) = 1588645.934
MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001478492777, 9.306622362e-11
MLMG: Timers: Solve = 0.215014136 Iter = 0.212593586 Bottom = 0.162606215
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1588650.64
MLMG: Initial residual (resid0) = 22571.20547
MLMG: Final Iter. 6 resid, resid/bnorm = 3.305568998e-05, 2.080740042e-11
MLMG: Timers: Solve = 0.150519648 Iter = 0.147972277 Bottom = 0.110258537
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6670311.018
MLMG: Initial residual (resid0) = 6670311.018
MLMG: Final Iter. 8 resid, resid/bnorm = 4.748475737e-07, 7.118822082e-14
MLMG: Timers: Solve = 0.205646664 Iter = 0.202783419 Bottom = 0.113459759
Done calling nodal solver
Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118
Timing summary:
Advection :2.493409585 seconds
MAC Proj :0.514821838 seconds
Nodal Proj :0.247254826 seconds
Reactions :0.206103916 seconds
Misc :0.076024362 seconds
Base State :0.002800088 seconds
Time to advance time step: 3.537729992
Writing plotfile 3
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.926873518
Total Time: 58.80519433
Unused ParmParse Variables:
[TOP]::maestro.v(nvals = 1) :: [1]
[TOP]::amr.ref_ratio(nvals = 6) :: [2, 2, 2, 2, 2, 2]
[TOP]::system.regtest_reduction(nvals = 1) :: [1]
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
Total GPU global memory (MB): 12066
Free GPU global memory (MB): 7962
[The Arena] space (MB): 9049
[The Device Arena] space (MB): 8
[The Managed Arena] space (MB): 8
[The Pinned Arena] space (MB): 8
AMReX (19.12-122-g6b3e01d08ce6) finalized