Initializing CUDA... CUDA initialized with 1 GPU AMReX (20.02-468-g15c6c1f8a9fa) initialized Calling Setup() Calling ReadParameters() WARNING: burning_cutoff_density_lo not supplied in the inputs file WARNING: setting burning_cutoff_density_lo = base_cutoff_density reading extern runtime parameters ... ERROR: problem in the namelist Calling VariableSetup() Calling set_method_params() Initializing Helmholtz EOS and using Coulomb corrections. Calling BCSetup() Calling init_base_state_geometry() Calling InitBaseStateGeometry() Calling Init() Calling InitData() ------------------------------------------------------------------------------ reading initial model 640 points found in the initial model file 6 variables found in the initial model file ------------------------------------------------------------------------------ model file mapping, level: 0 dr of MAESTRO base state = 562500.0000 dr of input file data = 562500.0000 maximum radius (cell-centered) of input model = 359718750.0 setting r_cutoff to 365 radius at r_cutoff 205593750.0000000 Maximum HSE Error = 0.6051370840E-04 (after putting initial model into base state arrays, and for density < base_cutoff_density) ------------------------------------------------------------------------------ Writing plotfile reacting_bubble-3d_pltInitData after InitData inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.879457821 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.07092797 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.829535036 Call to firstdt for level 0 gives dt_lev = 0.0004741795139 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139 Minimum firstdt over all levels = 0.0004741795139 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 2054.812696 MLMG: Initial residual (resid0) = 2054.812696 MLMG: Final Iter. 7 resid, resid/bnorm = 3.679687666e-10, 1.790765491e-13 MLMG: Timers: Solve = 3.45858338 Iter = 3.3912105 Bottom = 0.027773789 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1719927642 Minimum estdt over all levels = 0.1719927642 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642 Multiplying dt by init_shrink; dt = 0.1719927642 Ignoring this new dt since it's larger than the previous dt = 0.0004741795139 Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.820747277 Doing initial pressure iteration #1 Timestep 0 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2728631.974 MLMG: Initial residual (resid0) = 2728631.974 MLMG: Final Iter. 9 resid, resid/bnorm = 1.613213681e-05, 5.912170261e-12 MLMG: Timers: Solve = 0.264329228 Iter = 0.257550626 Bottom = 0.202119992 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2728631.974 MLMG: Initial residual (resid0) = 8.815134713 MLMG: Final Iter. 5 resid, resid/bnorm = 3.553933704e-05, 1.302459891e-11 MLMG: Timers: Solve = 0.121679711 Iter = 0.119590439 Bottom = 0.089167495 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.157554389e+10 MLMG: Initial residual (resid0) = 1.157554389e+10 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002932548523, 2.533400201e-13 MLMG: Timers: Solve = 3.476149777 Iter = 3.39645749 Bottom = 0.028165507 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.328454785 seconds MAC Proj :0.407898112 seconds Nodal Proj :3.6010613 seconds Reactions :0.218584398 seconds Misc :0.092721161 seconds Base State :0.01108487 seconds Time to advance time step: 4.648853448 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.793895252 Calling Evolve() Timestep 1 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1308380.192 MLMG: Initial residual (resid0) = 1308380.192 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001247962937, 9.538228602e-11 MLMG: Timers: Solve = 0.210677112 Iter = 0.208585646 Bottom = 0.16003118 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1308380.192 MLMG: Initial residual (resid0) = 10.01382184 MLMG: Final Iter. 5 resid, resid/bnorm = 2.053153387e-05, 1.569233011e-11 MLMG: Timers: Solve = 0.146775944 Iter = 0.144682485 Bottom = 0.114160166 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 5488892.554 MLMG: Initial residual (resid0) = 5488892.554 MLMG: Final Iter. 7 resid, resid/bnorm = 1.380336471e-06, 2.514781365e-13 MLMG: Timers: Solve = 3.470533011 Iter = 3.39624361 Bottom = 0.028019215 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.292292118 seconds MAC Proj :0.369446581 seconds Nodal Proj :3.588245571 seconds Reactions :0.21863719 seconds Misc :0.084093565 seconds Base State :0.010945104 seconds Time to advance time step: 4.552855674 Call to estdt for level 0 gives dt_lev = 0.201230266 Minimum estdt over all levels = 0.201230266 Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1426182.679 MLMG: Initial residual (resid0) = 1426182.679 MLMG: Final Iter. 9 resid, resid/bnorm = 1.397530376e-05, 9.799097948e-12 MLMG: Timers: Solve = 0.234902001 Iter = 0.232750447 Bottom = 0.178075631 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1426294.37 MLMG: Initial residual (resid0) = 36466.31284 MLMG: Final Iter. 9 resid, resid/bnorm = 2.064423187e-05, 1.447403307e-11 MLMG: Timers: Solve = 0.231089697 Iter = 0.228877498 Bottom = 0.173797506 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6063476.503 MLMG: Initial residual (resid0) = 6063476.503 MLMG: Final Iter. 8 resid, resid/bnorm = 3.501117479e-05, 5.774109089e-12 MLMG: Timers: Solve = 3.97790136 Iter = 3.90289904 Bottom = 0.032856408 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653 Timing summary: Advection :0.271947084 seconds MAC Proj :0.478273714 seconds Nodal Proj :4.099881927 seconds Reactions :0.21331044 seconds Misc :0.067409856 seconds Base State :0.011849524 seconds Time to advance time step: 5.130977783 Call to estdt for level 0 gives dt_lev = 0.2012658906 Minimum estdt over all levels = 0.2012658906 Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1597711.718 MLMG: Initial residual (resid0) = 1597711.718 MLMG: Final Iter. 10 resid, resid/bnorm = 4.442375275e-05, 2.780461096e-11 MLMG: Timers: Solve = 0.259690866 Iter = 0.257496604 Bottom = 0.196853795 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1597711.718 MLMG: Initial residual (resid0) = 76612.76449 MLMG: Final Iter. 9 resid, resid/bnorm = 6.649876596e-05, 4.162125446e-11 MLMG: Timers: Solve = 0.235501132 Iter = 0.233409386 Bottom = 0.178943809 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6670664.203 MLMG: Initial residual (resid0) = 6670664.203 MLMG: Final Iter. 8 resid, resid/bnorm = 2.37280283e-05, 3.557071317e-12 MLMG: Timers: Solve = 3.948806171 Iter = 3.874691424 Bottom = 0.032222075 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118 Timing summary: Advection :0.266746965 seconds MAC Proj :0.507390797 seconds Nodal Proj :4.067804731 seconds Reactions :0.211759307 seconds Misc :0.06736666 seconds Base State :0.009636414 seconds Time to advance time step: 5.121216451 Writing plotfile 3 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.85884704 Total Time: 63.16558299 Unused ParmParse Variables: [TOP]::maestro.v(nvals = 1) :: [1] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::system.regtest_reduction(nvals = 1) :: [1] [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Total GPU global memory (MB): 12066 Free GPU global memory (MB): 7954 [The Arena] space allocated (MB): 9049 [The Arena] space used (MB): 0 [The Device Arena] space allocated (MB): 8 [The Device Arena] space used (MB): 0 [The Managed Arena] space allocated (MB): 8 [The Managed Arena] space used (MB): 0 [The Pinned Arena] space allocated (MB): 8 [The Pinned Arena] space used (MB): 0 AMReX (20.02-468-g15c6c1f8a9fa) finalized