Initializing CUDA... CUDA initialized with 1 GPU AMReX (20.03-16-g4833a5afd190) initialized Calling Setup() Calling ReadParameters() WARNING: burning_cutoff_density_lo not supplied in the inputs file WARNING: setting burning_cutoff_density_lo = base_cutoff_density reading extern runtime parameters ... ERROR: problem in the namelist Calling VariableSetup() Calling set_method_params() Initializing Helmholtz EOS and using Coulomb corrections. Calling BCSetup() Calling init_base_state_geometry() Calling InitBaseStateGeometry() Calling Init() Calling InitData() ------------------------------------------------------------------------------ reading initial model 640 points found in the initial model file 6 variables found in the initial model file ------------------------------------------------------------------------------ model file mapping, level: 0 dr of MAESTRO base state = 562500.0000 dr of input file data = 562500.0000 maximum radius (cell-centered) of input model = 359718750.0 setting r_cutoff to 365 radius at r_cutoff 205593750.0000000 Maximum HSE Error = 0.6051370840E-04 (after putting initial model into base state arrays, and for density < base_cutoff_density) ------------------------------------------------------------------------------ Writing plotfile reacting_bubble-3d_pltInitData after InitData inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.868953896 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.066956918 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.822121651 Call to firstdt for level 0 gives dt_lev = 0.0004741795139 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139 Minimum firstdt over all levels = 0.0004741795139 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 2054.812696 MLMG: Initial residual (resid0) = 2054.812696 MLMG: Final Iter. 7 resid, resid/bnorm = 3.679687666e-10, 1.790765491e-13 MLMG: Timers: Solve = 3.41127515 Iter = 3.348003796 Bottom = 0.02702577 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1719927642 Minimum estdt over all levels = 0.1719927642 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642 Multiplying dt by init_shrink; dt = 0.1719927642 Ignoring this new dt since it's larger than the previous dt = 0.0004741795139 Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.87750547 Doing initial pressure iteration #1 Timestep 0 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2728631.974 MLMG: Initial residual (resid0) = 2728631.974 MLMG: Final Iter. 9 resid, resid/bnorm = 1.613213681e-05, 5.912170261e-12 MLMG: Timers: Solve = 0.266101792 Iter = 0.2590079 Bottom = 0.203203292 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2728627.724 MLMG: Initial residual (resid0) = 8736.552449 MLMG: Final Iter. 5 resid, resid/bnorm = 0.0002224583877, 8.152756998e-11 MLMG: Timers: Solve = 0.133120788 Iter = 0.131017651 Bottom = 0.100480899 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.157552587e+10 MLMG: Initial residual (resid0) = 1.157552587e+10 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002897620201, 2.503229862e-13 MLMG: Timers: Solve = 3.43235349 Iter = 3.353898896 Bottom = 0.028446643 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.325426635 seconds MAC Proj :0.421244577 seconds Nodal Proj :3.560952908 seconds Reactions :0.214398768 seconds Misc :0.091847427 seconds Base State :0.010323443 seconds Time to advance time step: 4.614044601 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.798607393 Calling Evolve() Timestep 1 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1308378.29 MLMG: Initial residual (resid0) = 1308378.29 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001220471895, 9.328127077e-11 MLMG: Timers: Solve = 0.232953693 Iter = 0.230682753 Bottom = 0.181779062 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1308378.29 MLMG: Initial residual (resid0) = 6.59579912 MLMG: Final Iter. 5 resid, resid/bnorm = 4.755886041e-05, 3.634947231e-11 MLMG: Timers: Solve = 0.120425212 Iter = 0.118311659 Bottom = 0.087678113 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 5488892.554 MLMG: Initial residual (resid0) = 5488892.554 MLMG: Final Iter. 7 resid, resid/bnorm = 1.386099029e-06, 2.525279946e-13 MLMG: Timers: Solve = 3.420503499 Iter = 3.349734718 Bottom = 0.028127675 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.293342045 seconds MAC Proj :0.365383211 seconds Nodal Proj :3.539178719 seconds Reactions :0.214323533 seconds Misc :0.08316421 seconds Base State :0.01119619 seconds Time to advance time step: 4.495580766 Call to estdt for level 0 gives dt_lev = 0.201230266 Minimum estdt over all levels = 0.201230266 Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1426182.679 MLMG: Initial residual (resid0) = 1426182.679 MLMG: Final Iter. 9 resid, resid/bnorm = 6.155402431e-05, 4.315998589e-11 MLMG: Timers: Solve = 0.257658717 Iter = 0.255451318 Bottom = 0.200273343 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1426182.679 MLMG: Initial residual (resid0) = 189632.7919 MLMG: Final Iter. 9 resid, resid/bnorm = 5.314627223e-05, 3.726470179e-11 MLMG: Timers: Solve = 0.260129424 Iter = 0.257998644 Bottom = 0.203053429 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6063809.131 MLMG: Initial residual (resid0) = 6063809.131 MLMG: Final Iter. 7 resid, resid/bnorm = 1.51398126e-06, 2.496749531e-13 MLMG: Timers: Solve = 3.435031731 Iter = 3.364135203 Bottom = 0.0263281 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653 Timing summary: Advection :0.268758852 seconds MAC Proj :0.529937802 seconds Nodal Proj :3.55490605 seconds Reactions :0.208247472 seconds Misc :0.066693338 seconds Base State :0.01314243 seconds Time to advance time step: 4.628700163 Call to estdt for level 0 gives dt_lev = 0.2012865787 Minimum estdt over all levels = 0.2012865787 Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1597945.893 MLMG: Initial residual (resid0) = 1597945.893 MLMG: Final Iter. 9 resid, resid/bnorm = 4.854649926e-05, 3.038056513e-11 MLMG: Timers: Solve = 0.248929589 Iter = 0.246807879 Bottom = 0.191793169 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1598178.682 MLMG: Initial residual (resid0) = 987271.3931 MLMG: Final Iter. 10 resid, resid/bnorm = 1.969852173e-05, 1.232560661e-11 MLMG: Timers: Solve = 0.271878361 Iter = 0.269685636 Bottom = 0.208693202 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6669643.586 MLMG: Initial residual (resid0) = 6669643.586 MLMG: Final Iter. 8 resid, resid/bnorm = 5.526050784e-05, 8.285376441e-12 MLMG: Timers: Solve = 3.900257121 Iter = 3.827109216 Bottom = 0.032104438 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118 Timing summary: Advection :0.271402992 seconds MAC Proj :0.532801278 seconds Nodal Proj :4.02072777 seconds Reactions :0.209366874 seconds Misc :0.0666066 seconds Base State :0.013021352 seconds Time to advance time step: 5.101099153 Writing plotfile 3 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.813670608 Total Time: 62.33736859 Unused ParmParse Variables: [TOP]::maestro.v(nvals = 1) :: [1] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::system.regtest_reduction(nvals = 1) :: [1] [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Total GPU global memory (MB): 12066 Free GPU global memory (MB): 7978 [The Arena] space allocated (MB): 9049 [The Arena] space used (MB): 0 [The Device Arena] space allocated (MB): 8 [The Device Arena] space used (MB): 0 [The Managed Arena] space allocated (MB): 8 [The Managed Arena] space used (MB): 0 [The Pinned Arena] space allocated (MB): 8 [The Pinned Arena] space used (MB): 0 AMReX (20.03-16-g4833a5afd190) finalized