Initializing CUDA...
CUDA initialized with 1 GPU
AMReX (20.03-44-ged5f0993f3f8) initialized
Calling Setup()
Calling ReadParameters()
WARNING: burning_cutoff_density_lo not supplied in the inputs file
WARNING: setting burning_cutoff_density_lo = base_cutoff_density
reading extern runtime parameters ...
ERROR: problem in the namelist
Calling VariableSetup()
Initializing Helmholtz EOS and using Coulomb corrections.
Calling set_method_params()
Calling BCSetup()
Calling init_base_state_geometry()
Calling InitBaseStateGeometry()
Calling Init()
Calling InitData()
------------------------------------------------------------------------------
reading initial model
640 points found in the initial model file
6 variables found in the initial model file
------------------------------------------------------------------------------
model file mapping, level: 0
dr of MAESTRO base state = 562500.0000
dr of input file data = 562500.0000
maximum radius (cell-centered) of input model = 359718750.0
setting r_cutoff to 365
radius at r_cutoff 205593750.0000000
Maximum HSE Error = 0.6051370840E-04
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
------------------------------------------------------------------------------
Writing plotfile reacting_bubble-3d_pltInitData after InitData
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.816206114
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Doing initial projection
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.071856321 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.763009571
Call to firstdt for level 0 gives dt_lev = 0.0004741795139
Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139
Minimum firstdt over all levels = 0.0004741795139
Doing initial divu iteration #1
Calling nodal solver
MLMG: Initial rhs = 2054.812696
MLMG: Initial residual (resid0) = 2054.812696
MLMG: Final Iter. 7 resid, resid/bnorm = 3.676809968e-10, 1.789365023e-13
MLMG: Timers: Solve = 3.464350912 Iter = 3.396420514 Bottom = 0.027655455
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.1719927642
Minimum estdt over all levels = 0.1719927642
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642
Multiplying dt by init_shrink; dt = 0.1719927642
Ignoring this new dt since it's larger than the previous dt = 0.0004741795139
Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.778715984
Doing initial pressure iteration #1
Timestep 0 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 2728631.974
MLMG: Initial residual (resid0) = 2728631.974
MLMG: Final Iter. 9 resid, resid/bnorm = 1.638592221e-05, 6.005178553e-12
MLMG: Timers: Solve = 0.243558894 Iter = 0.236332664 Bottom = 0.17953914
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 2728631.974
MLMG: Initial residual (resid0) = 8.815139091
MLMG: Final Iter. 5 resid, resid/bnorm = 3.159769264e-05, 1.158004925e-11
MLMG: Timers: Solve = 0.141511206 Iter = 0.139369292 Bottom = 0.107872112
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.157554389e+10
MLMG: Initial residual (resid0) = 1.157554389e+10
MLMG: Final Iter. 7 resid, resid/bnorm = 0.002893686295, 2.499827499e-13
MLMG: Timers: Solve = 3.501199219 Iter = 3.41856058 Bottom = 0.030399572
Done calling nodal solver
Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :0.281743492 seconds
MAC Proj :0.407078645 seconds
Nodal Proj :3.615986987 seconds
Reactions :0.217754147 seconds
Misc :0.055963404 seconds
Base State :0.009759541 seconds
Time to advance time step: 4.578645921
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.852382811
Calling Evolve()
Timestep 1 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1308380.192
MLMG: Initial residual (resid0) = 1308380.192
MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001224679872, 9.360275248e-11
MLMG: Timers: Solve = 0.252216474 Iter = 0.250072208 Bottom = 0.199966824
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1308380.192
MLMG: Initial residual (resid0) = 6.595800131
MLMG: Final Iter. 5 resid, resid/bnorm = 6.038321454e-05, 4.615112252e-11
MLMG: Timers: Solve = 0.150307424 Iter = 0.148171439 Bottom = 0.116332805
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 5488892.554
MLMG: Initial residual (resid0) = 5488892.554
MLMG: Final Iter. 7 resid, resid/bnorm = 1.395994332e-06, 2.543307813e-13
MLMG: Timers: Solve = 3.478615957 Iter = 3.401150722 Bottom = 0.027616414
Done calling nodal solver
Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :0.253379505 seconds
MAC Proj :0.415041173 seconds
Nodal Proj :3.589432141 seconds
Reactions :0.218273933 seconds
Misc :0.049266875 seconds
Base State :0.009485635 seconds
Time to advance time step: 4.525539699
Call to estdt for level 0 gives dt_lev = 0.201230266
Minimum estdt over all levels = 0.201230266
Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1426182.679
MLMG: Initial residual (resid0) = 1426182.679
MLMG: Final Iter. 9 resid, resid/bnorm = 6.005675725e-05, 4.211014348e-11
MLMG: Timers: Solve = 0.250891446 Iter = 0.24873771 Bottom = 0.192733598
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1426182.679
MLMG: Initial residual (resid0) = 36466.31286
MLMG: Final Iter. 9 resid, resid/bnorm = 1.063926748e-05, 7.459961218e-12
MLMG: Timers: Solve = 0.243056368 Iter = 0.240939061 Bottom = 0.184978921
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6063809.132
MLMG: Initial residual (resid0) = 6063809.132
MLMG: Final Iter. 7 resid, resid/bnorm = 1.516309567e-06, 2.500589207e-13
MLMG: Timers: Solve = 3.46207408 Iter = 3.385528506 Bottom = 0.029272705
Done calling nodal solver
Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653
Timing summary:
Advection :0.222948199 seconds
MAC Proj :0.506270439 seconds
Nodal Proj :3.571718794 seconds
Reactions :0.197560067 seconds
Misc :0.027918313 seconds
Base State :0.010303824 seconds
Time to advance time step: 4.526538316
Call to estdt for level 0 gives dt_lev = 0.2012865787
Minimum estdt over all levels = 0.2012865787
Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1597945.893
MLMG: Initial residual (resid0) = 1597945.893
MLMG: Final Iter. 9 resid, resid/bnorm = 4.776988027e-05, 2.98945543e-11
MLMG: Timers: Solve = 0.248107533 Iter = 0.245943156 Bottom = 0.190003444
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1597945.893
MLMG: Initial residual (resid0) = 58716.86584
MLMG: Final Iter. 8 resid, resid/bnorm = 9.598225312e-05, 6.006602198e-11
MLMG: Timers: Solve = 0.20885165 Iter = 0.206723329 Bottom = 0.156912397
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6670331.571
MLMG: Initial residual (resid0) = 6670331.571
MLMG: Final Iter. 7 resid, resid/bnorm = 1.667707693e-06, 2.500187097e-13
MLMG: Timers: Solve = 3.465331075 Iter = 3.388340088 Bottom = 0.028866628
Done calling nodal solver
Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118
Timing summary:
Advection :0.220997028 seconds
MAC Proj :0.469774946 seconds
Nodal Proj :3.575850221 seconds
Reactions :0.18394389 seconds
Misc :0.028214579 seconds
Base State :0.010208335 seconds
Time to advance time step: 4.478945494
Writing plotfile 3
inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09
Time to write plotfile: 0.74029213
Total Time: 65.31859259
Unused ParmParse Variables:
[TOP]::maestro.v(nvals = 1) :: [1]
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
Total GPU global memory (MB): 12066
Free GPU global memory (MB): 7966
[The Arena] space allocated (MB): 9049
[The Arena] space used (MB): 0
[The Device Arena] space allocated (MB): 8
[The Device Arena] space used (MB): 0
[The Managed Arena] space allocated (MB): 8
[The Managed Arena] space used (MB): 0
[The Pinned Arena] space allocated (MB): 8
[The Pinned Arena] space used (MB): 0
AMReX (20.03-44-ged5f0993f3f8) finalized