Initializing CUDA... CUDA initialized with 1 GPU AMReX (20.03-169-g9b6ba25d90ce) initialized Calling Setup() Calling ReadParameters() WARNING: burning_cutoff_density_lo not supplied in the inputs file WARNING: setting burning_cutoff_density_lo = base_cutoff_density reading extern runtime parameters ... ERROR: problem in the namelist Calling VariableSetup() Initializing Helmholtz EOS and using Coulomb corrections. Calling set_method_params() Calling BCSetup() Calling init_base_state_geometry() Calling InitBaseStateGeometry() Calling Init() Calling InitData() initdata model_File = model.hse.cool.coulomb model file = model.hse.cool.coulomb reading initial model 640 points found in the initial model 6 variables found in the initial model model file mapping, level: 0 dr of MAESTRO base state = 562500.000000 dr of input file data = 562500.000000 maximum radius (cell-centered) of input model = 359718750.000000 setting r_cutoff to 365 radius at r_cutoff 205593750 Maximum HSE Error = 0.000061 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile reacting_bubble-3d_pltInitData after InitData inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.705819378 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.06799086 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.678035925 Call to firstdt for level 0 gives dt_lev = 0.0004741795139 Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139 Minimum firstdt over all levels = 0.0004741795139 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 2054.812665 MLMG: Initial residual (resid0) = 2054.812665 MLMG: Final Iter. 7 resid, resid/bnorm = 3.687610217e-10, 1.794621125e-13 MLMG: Timers: Solve = 3.388513171 Iter = 3.323395291 Bottom = 0.026691999 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.1719927642 Minimum estdt over all levels = 0.1719927642 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642 Multiplying dt by init_shrink; dt = 0.1719927642 Ignoring this new dt since it's larger than the previous dt = 0.0004741795139 Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.652455705 Doing initial pressure iteration #1 Timestep 0 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2728631.974 MLMG: Initial residual (resid0) = 2728631.974 MLMG: Final Iter. 9 resid, resid/bnorm = 1.448590774e-05, 5.308853622e-12 MLMG: Timers: Solve = 0.25986981 Iter = 0.255321098 Bottom = 0.198574886 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2728631.974 MLMG: Initial residual (resid0) = 8.815136378 MLMG: Final Iter. 5 resid, resid/bnorm = 0.0001147196839, 4.20429303e-11 MLMG: Timers: Solve = 0.123571468 Iter = 0.121513739 Bottom = 0.090226483 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 1.15755439e+10 MLMG: Initial residual (resid0) = 1.15755439e+10 MLMG: Final Iter. 7 resid, resid/bnorm = 0.002908349037, 2.5124945e-13 MLMG: Timers: Solve = 3.415804732 Iter = 3.334181271 Bottom = 0.027545464 Done calling nodal solver Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.268949379 seconds MAC Proj :0.401542369 seconds Nodal Proj :3.535366485 seconds Reactions :0.197537987 seconds Misc :0.055011456 seconds Base State :0.007339797 seconds Time to advance time step: 4.458532422 Writing plotfile 0 after all initialization inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.686996163 Calling Evolve() Timestep 1 starts with TIME = 0 DT = 0.0004741795139 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1308380.192 MLMG: Initial residual (resid0) = 1308380.192 MLMG: Final Iter. 8 resid, resid/bnorm = 0.0001237809338, 9.460624255e-11 MLMG: Timers: Solve = 0.259819145 Iter = 0.257528069 Bottom = 0.206858214 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1308380.192 MLMG: Initial residual (resid0) = 6.595802379 MLMG: Final Iter. 5 resid, resid/bnorm = 4.396570042e-05, 3.360315349e-11 MLMG: Timers: Solve = 0.140723462 Iter = 0.138637025 Bottom = 0.107393333 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 5488892.555 MLMG: Initial residual (resid0) = 5488892.555 MLMG: Final Iter. 7 resid, resid/bnorm = 1.362990588e-06, 2.483179575e-13 MLMG: Timers: Solve = 3.476238852 Iter = 3.40008911 Bottom = 0.028663879 Done calling nodal solver Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139 Timing summary: Advection :0.253663017 seconds MAC Proj :0.412507645 seconds Nodal Proj :3.586370203 seconds Reactions :0.19648452 seconds Misc :0.049690712 seconds Base State :0.009662376 seconds Time to advance time step: 4.498846101 Call to estdt for level 0 gives dt_lev = 0.201230266 Minimum estdt over all levels = 0.201230266 Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1426182.68 MLMG: Initial residual (resid0) = 1426182.68 MLMG: Final Iter. 9 resid, resid/bnorm = 2.268144625e-05, 1.590360517e-11 MLMG: Timers: Solve = 0.265571177 Iter = 0.263518159 Bottom = 0.207210522 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1426182.68 MLMG: Initial residual (resid0) = 36466.31284 MLMG: Final Iter. 9 resid, resid/bnorm = 4.002789742e-05, 2.806645879e-11 MLMG: Timers: Solve = 0.250207908 Iter = 0.248156334 Bottom = 0.191986557 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6063809.134 MLMG: Initial residual (resid0) = 6063809.134 MLMG: Final Iter. 8 resid, resid/bnorm = 4.937341298e-05, 8.142309873e-12 MLMG: Timers: Solve = 3.881132544 Iter = 3.807578196 Bottom = 0.032001816 Done calling nodal solver Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653 Timing summary: Advection :0.223018428 seconds MAC Proj :0.527571791 seconds Nodal Proj :3.991997697 seconds Reactions :0.188768815 seconds Misc :0.027727835 seconds Base State :0.009201998 seconds Time to advance time step: 4.959209766 Call to estdt for level 0 gives dt_lev = 0.2012865787 Minimum estdt over all levels = 0.2012865787 Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118 Cell Count: Level 0, 1327104 cells inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 1598057.391 MLMG: Initial residual (resid0) = 1598057.391 MLMG: Final Iter. 9 resid, resid/bnorm = 4.214160161e-05, 2.637051827e-11 MLMG: Timers: Solve = 0.22942081 Iter = 0.227351951 Bottom = 0.171427024 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 1597945.894 MLMG: Initial residual (resid0) = 399185.5292 MLMG: Final Iter. 9 resid, resid/bnorm = 5.253917929e-05, 3.28791979e-11 MLMG: Timers: Solve = 0.233037646 Iter = 0.23099874 Bottom = 0.174930184 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 6670331.573 MLMG: Initial residual (resid0) = 6670331.573 MLMG: Final Iter. 7 resid, resid/bnorm = 2.287264257e-05, 3.429011335e-12 MLMG: Timers: Solve = 3.408293653 Iter = 3.33447043 Bottom = 0.029772333 Done calling nodal solver Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118 Timing summary: Advection :0.222966894 seconds MAC Proj :0.474573271 seconds Nodal Proj :3.518995278 seconds Reactions :0.191013164 seconds Misc :0.027987646 seconds Base State :0.009803489 seconds Time to advance time step: 4.435661815 Writing plotfile 3 inner sponge: r_sp , r_tp : 0.186468750000E+09 0.224718750000E+09 Time to write plotfile: 0.655431797 Total Time: 64.80562405 Unused ParmParse Variables: [TOP]::maestro.v(nvals = 1) :: [1] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Total GPU global memory (MB): 12066 Free GPU global memory (MB): 7977 [The Arena] space allocated (MB): 9049 [The Arena] space used (MB): 0 [The Device Arena] space allocated (MB): 8 [The Device Arena] space used (MB): 0 [The Managed Arena] space allocated (MB): 8 [The Managed Arena] space used (MB): 0 [The Pinned Arena] space allocated (MB): 8 [The Pinned Arena] space used (MB): 0 AMReX (20.03-169-g9b6ba25d90ce) finalized