Initializing CUDA... CUDA initialized with 1 GPU AMReX (20.03-177-g60d291de4ffa) initialized Calling Setup() Calling ReadParameters() WARNING: burning_cutoff_density_lo not supplied in the inputs file WARNING: setting burning_cutoff_density_lo = base_cutoff_density reading extern runtime parameters ... ERROR: problem in the namelist Calling VariableSetup() Calling set_method_params() Calling BCSetup() Calling init_base_state_geometry() Calling InitBaseStateGeometry() Calling Init() Calling InitData() initdata model_File = cutoff densities: low density cutoff (for mapping the model) = 1e-10 buoyancy cutoff density (for zeroing rho - rho_0, centrifugal term) = 5e-10 anelastic cutoff = 1e-10 Maximum HSE Error = 4.547473509e-13 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile RT_pltInitData after InitData Time to write plotfile: 0.064268902 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.004334438 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile RT_pltafter_InitProj after InitProj Time to write plotfile: 0.061623357 Call to firstdt for level 0 gives dt_lev = 0.000608983586 Multiplying dt_lev by init_shrink; dt_lev = 6.08983586e-05 Minimum firstdt over all levels = 6.08983586e-05 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.004122578 Iter = 0 Bottom = 0 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.08660444773 Minimum estdt over all levels = 0.08660444773 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.08660444773 Multiplying dt by init_shrink; dt = 0.008660444773 Ignoring this new dt since it's larger than the previous dt = 6.08983586e-05 Writing plotfile RT_pltafter_DivuIter after final DivuIter Time to write plotfile: 0.056365941 Doing initial pressure iteration #1 Timestep 0 starts with TIME = 0 DT = 6.08983586e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 0.002421164472 MLMG: Initial residual (resid0) = 0.002421164472 MLMG: Final Iter. 9 resid, resid/bnorm = 1.751907839e-13, 7.235806819e-11 MLMG: Timers: Solve = 0.075161618 Iter = 0.07296156 Bottom = 0.020223571 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 0.002421164472 MLMG: Initial residual (resid0) = 1.98624303e-06 MLMG: Final Iter. 7 resid, resid/bnorm = 2.69721551e-14, 1.114015814e-11 MLMG: Timers: Solve = 0.060536058 Iter = 0.058593417 Bottom = 0.017693944 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 58.12629965 MLMG: Initial residual (resid0) = 58.12629965 MLMG: Final Iter. 8 resid, resid/bnorm = 6.423306331e-12, 1.105060252e-13 MLMG: Timers: Solve = 0.284344382 Iter = 0.278576075 Bottom = 0.002158463 Done calling nodal solver Timestep 0 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05 Timing summary: Advection :0.076989748 seconds MAC Proj :0.144901929 seconds Nodal Proj :0.301009265 seconds Reactions :0.008610433 seconds Misc :0.007618514 seconds Base State :0.005223204 seconds Time to advance time step: 0.539273553 Writing plotfile 0 after all initialization Time to write plotfile: 0.060105794 Calling Evolve() Timestep 1 starts with TIME = 0 DT = 6.08983586e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2.394223808e-05 MLMG: Initial residual (resid0) = 2.394223808e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 3.184769581e-16, 1.330188753e-11 MLMG: Timers: Solve = 0.076225673 Iter = 0.073571325 Bottom = 0.020603283 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2.39832343e-05 MLMG: Initial residual (resid0) = 1.763119147e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 1.659633793e-15, 6.9199749e-11 MLMG: Timers: Solve = 0.072658913 Iter = 0.070679759 Bottom = 0.018165002 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003539812449 MLMG: Initial residual (resid0) = 0.003539812449 MLMG: Final Iter. 8 resid, resid/bnorm = 3.900959417e-16, 1.102024323e-13 MLMG: Timers: Solve = 0.289275001 Iter = 0.282696234 Bottom = 0.002587437 Done calling nodal solver Timestep 1 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05 Timing summary: Advection :0.082319164 seconds MAC Proj :0.158184387 seconds Nodal Proj :0.307127639 seconds Reactions :0.007871699 seconds Misc :0.008054092 seconds Base State :0.006239683 seconds Time to advance time step: 0.56371422 Call to estdt for level 0 gives dt_lev = 0.31288788 Minimum estdt over all levels = 0.31288788 Timestep 2 starts with TIME = 6.08983586e-05 DT = 6.698819446e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.050043655e-05 MLMG: Initial residual (resid0) = 3.050043655e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 2.617772476e-15, 8.582737732e-11 MLMG: Timers: Solve = 0.081965792 Iter = 0.079425327 Bottom = 0.020218278 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.045748773e-05 MLMG: Initial residual (resid0) = 3.366845433e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 2.61813691e-15, 8.596036987e-11 MLMG: Timers: Solve = 0.07219847 Iter = 0.070102192 Bottom = 0.016862652 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003893960936 MLMG: Initial residual (resid0) = 0.003893960936 MLMG: Final Iter. 8 resid, resid/bnorm = 4.289103794e-16, 1.101475815e-13 MLMG: Timers: Solve = 0.28436708 Iter = 0.279423288 Bottom = 0.002449959 Done calling nodal solver Timestep 2 ends with TIME = 0.0001278865531 DT = 6.698819446e-05 Timing summary: Advection :0.080072231 seconds MAC Proj :0.163349643 seconds Nodal Proj :0.301587769 seconds Reactions :0.007482569 seconds Misc :0.005658982 seconds Base State :0.006526313 seconds Time to advance time step: 0.558337507 Call to estdt for level 0 gives dt_lev = 0.3131600762 Minimum estdt over all levels = 0.3131600762 Timestep 3 starts with TIME = 0.0001278865531 DT = 7.368701391e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.967529061e-05 MLMG: Initial residual (resid0) = 3.967529061e-05 MLMG: Final Iter. 11 resid, resid/bnorm = 4.777733808e-16, 1.2042089e-11 MLMG: Timers: Solve = 0.089446236 Iter = 0.086806913 Bottom = 0.022163469 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.961563867e-05 MLMG: Initial residual (resid0) = 5.777177442e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 3.459591305e-15, 8.732892922e-11 MLMG: Timers: Solve = 0.071788391 Iter = 0.069832799 Bottom = 0.017183572 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004283374994 MLMG: Initial residual (resid0) = 0.004283374994 MLMG: Final Iter. 8 resid, resid/bnorm = 4.807352433e-16, 1.122328173e-13 MLMG: Timers: Solve = 0.280099126 Iter = 0.274820621 Bottom = 0.00211741 Done calling nodal solver Timestep 3 ends with TIME = 0.000201573567 DT = 7.368701391e-05 Timing summary: Advection :0.076419911 seconds MAC Proj :0.170923531 seconds Nodal Proj :0.298484514 seconds Reactions :0.006675477 seconds Misc :0.005490273 seconds Base State :0.007430429 seconds Time to advance time step: 0.558141203 Call to estdt for level 0 gives dt_lev = 0.3131175546 Minimum estdt over all levels = 0.3131175546 Timestep 4 starts with TIME = 0.000201573567 DT = 8.10557153e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 5.599956411e-05 MLMG: Initial residual (resid0) = 5.599956411e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 5.207774235e-15, 9.299669236e-11 MLMG: Timers: Solve = 0.0813425 Iter = 0.0786133 Bottom = 0.020155812 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 5.604848277e-05 MLMG: Initial residual (resid0) = 8.590858189e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 1.204533367e-15, 2.149091835e-11 MLMG: Timers: Solve = 0.075104525 Iter = 0.073146008 Bottom = 0.02046398 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004711843464 MLMG: Initial residual (resid0) = 0.004711843464 MLMG: Final Iter. 8 resid, resid/bnorm = 5.31475905e-16, 1.127957474e-13 MLMG: Timers: Solve = 0.284947587 Iter = 0.279099043 Bottom = 0.002678728 Done calling nodal solver Timestep 4 ends with TIME = 0.0002826292823 DT = 8.10557153e-05 Timing summary: Advection :0.073165711 seconds MAC Proj :0.165100027 seconds Nodal Proj :0.301076671 seconds Reactions :0.007737431 seconds Misc :0.005706546 seconds Base State :0.005475353 seconds Time to advance time step: 0.552951494 Call to estdt for level 0 gives dt_lev = 0.3128512669 Minimum estdt over all levels = 0.3128512669 Timestep 5 starts with TIME = 0.0002826292823 DT = 8.916128683e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 7.350751969e-05 MLMG: Initial residual (resid0) = 7.350751969e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 4.777270164e-15, 6.499022391e-11 MLMG: Timers: Solve = 0.081554783 Iter = 0.078949013 Bottom = 0.020260663 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 7.35075197e-05 MLMG: Initial residual (resid0) = 1.261325019e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 1.246086195e-15, 1.695181935e-11 MLMG: Timers: Solve = 0.075813125 Iter = 0.073868657 Bottom = 0.020911087 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.005182753702 MLMG: Initial residual (resid0) = 0.005182753702 MLMG: Final Iter. 8 resid, resid/bnorm = 6.034669292e-16, 1.164375087e-13 MLMG: Timers: Solve = 0.280119764 Iter = 0.275003111 Bottom = 0.002283061 Done calling nodal solver Timestep 5 ends with TIME = 0.0003717905691 DT = 8.916128683e-05 Timing summary: Advection :0.079408794 seconds MAC Proj :0.166364124 seconds Nodal Proj :0.297847396 seconds Reactions :0.006164608 seconds Misc :0.005110499 seconds Base State :0.00619368 seconds Time to advance time step: 0.555037714 Writing plotfile 5 Time to write plotfile: 0.067879124 Total Time: 3.909594035 Unused ParmParse Variables: [TOP]::maestro.v(nvals = 1) :: [1] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.check_file(nvals = 1) :: [RT_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Total GPU global memory (MB): 12066 Free GPU global memory (MB): 10390 [The Arena] space allocated (MB): 9049 [The Arena] space used (MB): 0 [The Device Arena] space allocated (MB): 8 [The Device Arena] space used (MB): 0 [The Managed Arena] space allocated (MB): 8 [The Managed Arena] space used (MB): 0 [The Pinned Arena] space allocated (MB): 8 [The Pinned Arena] space used (MB): 0 AMReX (20.03-177-g60d291de4ffa) finalized