Initializing CUDA...
CUDA initialized with 1 GPU
AMReX (20.04-234-gd04999c60f76) initialized
Calling Setup()
Calling ReadParameters()
WARNING: burning_cutoff_density_lo not supplied in the inputs file
WARNING: setting burning_cutoff_density_lo = base_cutoff_density
reading extern runtime parameters ...
ERROR: problem in the namelist
Calling VariableSetup()
Initializing Helmholtz EOS and using Coulomb corrections.
Calling set_method_params()
Calling BCSetup()
Calling init_base_state_geometry()
Calling InitBaseStateGeometry()
Calling BaseStateGeometry::Init()
Calling Init()
Calling InitData()
initdata model_File = model.hse.cool.coulomb
model file = model.hse.cool.coulomb
reading initial model
640 points found in the initial model
6 variables found in the initial model
model file mapping, level: 0
dr of MAESTRO base state = 562500.000000
dr of input file data = 562500.000000
maximum radius (cell-centered) of input model = 359718750.000000
setting r_cutoff to 365
radius at r_cutoff 205593750
Maximum HSE Error = 0.000061
(after putting initial model into base state arrays, and
for density < base_cutoff_density)
Writing plotfile reacting_bubble-3d_pltInitData after InitData
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 0.66432492
inner sponge: r_sp , r_tp : 186468750, 224718750
Doing initial projection
Calling nodal solver
MLMG: Initial rhs = 0
MLMG: Initial residual (resid0) = 0
MLMG: No iterations needed
MLMG: Timers: Solve = 0.062973994 Iter = 0 Bottom = 0
Done calling nodal solver
Writing plotfile reacting_bubble-3d_pltafter_InitProj after InitProj
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 0.635953953
Call to firstdt for level 0 gives dt_lev = 0.0004741795139
Multiplying dt_lev by init_shrink; dt_lev = 0.0004741795139
Minimum firstdt over all levels = 0.0004741795139
Doing initial divu iteration #1
Calling nodal solver
MLMG: Initial rhs = 2054.812665
MLMG: Initial residual (resid0) = 2054.812665
MLMG: Final Iter. 7 resid, resid/bnorm = 3.692477435e-10, 1.796989817e-13
MLMG: Timers: Solve = 3.374619592 Iter = 3.313878378 Bottom = 0.026413671
Done calling nodal solver
Call to estdt for level 0 gives dt_lev = 0.1719927642
Minimum estdt over all levels = 0.1719927642
Call to estdt at end of istep_divu_iter = 1 gives dt = 0.1719927642
Multiplying dt by init_shrink; dt = 0.1719927642
Ignoring this new dt since it's larger than the previous dt = 0.0004741795139
Writing plotfile reacting_bubble-3d_pltafter_DivuIter after final DivuIter
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 0.62285632
Doing initial pressure iteration #1
Timestep 0 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 2728631.974
MLMG: Initial residual (resid0) = 2728631.974
MLMG: Final Iter. 9 resid, resid/bnorm = 1.635891385e-05, 5.995280423e-12
MLMG: Timers: Solve = 0.258158042 Iter = 0.253828649 Bottom = 0.198274213
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 2728627.797
MLMG: Initial residual (resid0) = 8728.892478
MLMG: Final Iter. 5 resid, resid/bnorm = 0.0002654236741, 9.727368255e-11
MLMG: Timers: Solve = 0.147563772 Iter = 0.145550181 Bottom = 0.115019445
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 1.157552618e+10
MLMG: Initial residual (resid0) = 1.157552618e+10
MLMG: Final Iter. 7 resid, resid/bnorm = 0.003150522709, 2.72171015e-13
MLMG: Timers: Solve = 3.385957268 Iter = 3.307456221 Bottom = 0.026977658
Done calling nodal solver
Timestep 0 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :0.216847948 seconds
MAC Proj :0.423107068 seconds
Nodal Proj :3.495552039 seconds
Reactions :0.201705441 seconds
Misc :0.045808055 seconds
Base State :0.00669878 seconds
Time to advance time step: 4.383178632
Writing plotfile 0 after all initialization
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 0.638826619
Calling Evolve()
Timestep 1 starts with TIME = 0 DT = 0.0004741795139
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1308378.367
MLMG: Initial residual (resid0) = 1308378.367
MLMG: Final Iter. 8 resid, resid/bnorm = 0.000125548002, 9.595695339e-11
MLMG: Timers: Solve = 0.229270718 Iter = 0.227156003 Bottom = 0.178153514
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1308380.235
MLMG: Initial residual (resid0) = 8727.993864
MLMG: Final Iter. 6 resid, resid/bnorm = 2.072191455e-05, 1.583783826e-11
MLMG: Timers: Solve = 0.155944197 Iter = 0.15393669 Bottom = 0.11734057
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 5488883.997
MLMG: Initial residual (resid0) = 5488883.997
MLMG: Final Iter. 7 resid, resid/bnorm = 1.371430699e-06, 2.49856018e-13
MLMG: Timers: Solve = 3.378418647 Iter = 3.307613975 Bottom = 0.030265452
Done calling nodal solver
Timestep 1 ends with TIME = 0.0004741795139 DT = 0.0004741795139
Timing summary:
Advection :0.19996119 seconds
MAC Proj :0.396860595 seconds
Nodal Proj :3.478918417 seconds
Reactions :0.199775745 seconds
Misc :0.036081505 seconds
Base State :0.007533823 seconds
Time to advance time step: 4.311769722
Call to estdt for level 0 gives dt_lev = 0.2012294727
Minimum estdt over all levels = 0.2012294727
Call to estdt at beginning of step 2 gives dt =0.2012294727
dt_growth factor limits the new dt = 0.0005215974653
Timestep 2 starts with TIME = 0.0004741795139 DT = 0.0005215974653
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1426180.192
MLMG: Initial residual (resid0) = 1426180.192
MLMG: Final Iter. 9 resid, resid/bnorm = 1.726151873e-05, 1.210332245e-11
MLMG: Timers: Solve = 0.247919859 Iter = 0.245813069 Bottom = 0.190975094
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1426291.688
MLMG: Initial residual (resid0) = 36460.70947
MLMG: Final Iter. 9 resid, resid/bnorm = 3.139053724e-05, 2.200849764e-11
MLMG: Timers: Solve = 0.221944976 Iter = 0.219940791 Bottom = 0.165173939
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6063485.841
MLMG: Initial residual (resid0) = 6063485.841
MLMG: Final Iter. 7 resid, resid/bnorm = 3.016134708e-05, 4.97425868e-12
MLMG: Timers: Solve = 3.383716948 Iter = 3.315647518 Bottom = 0.030357186
Done calling nodal solver
Timestep 2 ends with TIME = 0.0009957769792 DT = 0.0005215974653
Timing summary:
Advection :0.171127982 seconds
MAC Proj :0.481725754 seconds
Nodal Proj :3.483913388 seconds
Reactions :0.183068856 seconds
Misc :0.017562778 seconds
Base State :0.008977402 seconds
Time to advance time step: 4.337555577
Call to estdt for level 0 gives dt_lev = 0.201266633
Minimum estdt over all levels = 0.201266633
Call to estdt at beginning of step 3 gives dt =0.201266633
dt_growth factor limits the new dt = 0.0005737572118
Timestep 3 starts with TIME = 0.0009957769792 DT = 0.0005737572118
Cell Count:
Level 0, 1327104 cells
inner sponge: r_sp , r_tp : 186468750, 224718750
<<< STEP 1 : react state >>>
<<< STEP 2 : make w0 >>>
<<< STEP 3 : create MAC velocities >>>
MLMG: Initial rhs = 1597713.456
MLMG: Initial residual (resid0) = 1597713.456
MLMG: Final Iter. 9 resid, resid/bnorm = 5.229222663e-05, 3.272941492e-11
MLMG: Timers: Solve = 0.248637824 Iter = 0.24652725 Bottom = 0.191614703
<<< STEP 4 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 4a: thermal conduct >>>
<<< STEP 5 : react state >>>
<<< STEP 6 : make new S and new w0 >>>
<<< STEP 7 : create MAC velocities >>>
MLMG: Initial rhs = 1597946.234
MLMG: Initial residual (resid0) = 39075.21768
MLMG: Final Iter. 9 resid, resid/bnorm = 2.8524026e-05, 1.785042913e-11
MLMG: Timers: Solve = 0.229309993 Iter = 0.227302796 Bottom = 0.172121165
<<< STEP 8 : advect base >>>
: density_advance >>>
: tracer_advance >>>
: enthalpy_advance >>>
<<< STEP 8a: thermal conduct >>>
<<< STEP 9 : react state >>>
<<< STEP 10: make new S >>>
<<< STEP 11: update and project new velocity >>>
Calling nodal solver
MLMG: Initial rhs = 6669975.865
MLMG: Initial residual (resid0) = 6669975.865
MLMG: Final Iter. 7 resid, resid/bnorm = 3.402591813e-05, 5.10135551e-12
MLMG: Timers: Solve = 3.375608608 Iter = 3.307321834 Bottom = 0.027665688
Done calling nodal solver
Timestep 3 ends with TIME = 0.001569534191 DT = 0.0005737572118
Timing summary:
Advection :0.171644091 seconds
MAC Proj :0.489660264 seconds
Nodal Proj :3.47590803 seconds
Reactions :0.195558897 seconds
Misc :0.017209776 seconds
Base State :0.008453835 seconds
Time to advance time step: 4.35012552
Writing plotfile 3
inner sponge: r_sp , r_tp : 186468750, 224718750
Time to write plotfile: 0.615064615
Total Time: 27.7062857
Unused ParmParse Variables:
[TOP]::maestro.v(nvals = 1) :: [1]
[TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2]
[TOP]::amr.check_file(nvals = 1) :: [reacting_bubble-3d_chk]
[TOP]::amr.checkpoint_files_output(nvals = 1) :: [0]
Total GPU global memory (MB): 12066
Free GPU global memory (MB): 7977
[The Arena] space allocated (MB): 9049
[The Arena] space used (MB): 0
[The Device Arena] space allocated (MB): 8
[The Device Arena] space used (MB): 0
[The Managed Arena] space allocated (MB): 8
[The Managed Arena] space used (MB): 0
[The Pinned Arena] space allocated (MB): 8
[The Pinned Arena] space used (MB): 0
AMReX (20.04-234-gd04999c60f76) finalized