Initializing CUDA... CUDA initialized with 1 GPU AMReX (20.05-35-gc11bbc9bec27) initialized Calling Setup() Calling ReadParameters() WARNING: burning_cutoff_density_lo not supplied in the inputs file WARNING: setting burning_cutoff_density_lo = base_cutoff_density reading extern runtime parameters ... ERROR: problem in the namelist Calling VariableSetup() Calling set_method_params() Calling BCSetup() Calling init_base_state_geometry() Calling BaseStateGeometry::Init() Calling Init() Calling InitData() initdata model_File = cutoff densities: low density cutoff (for mapping the model) = 1e-10 buoyancy cutoff density (for zeroing rho - rho_0, centrifugal term) = 5e-10 anelastic cutoff = 1e-10 Maximum HSE Error = 4.547473509e-13 (after putting initial model into base state arrays, and for density < base_cutoff_density) Writing plotfile RT_pltInitData after InitData Time to write plotfile: 0.064858503 Doing initial projection Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.005256426 Iter = 0 Bottom = 0 Done calling nodal solver Writing plotfile RT_pltafter_InitProj after InitProj Time to write plotfile: 0.062833414 Call to firstdt for level 0 gives dt_lev = 0.000608983586 Multiplying dt_lev by init_shrink; dt_lev = 6.08983586e-05 Minimum firstdt over all levels = 6.08983586e-05 Doing initial divu iteration #1 Calling nodal solver MLMG: Initial rhs = 0 MLMG: Initial residual (resid0) = 0 MLMG: No iterations needed MLMG: Timers: Solve = 0.004935943 Iter = 0 Bottom = 0 Done calling nodal solver Call to estdt for level 0 gives dt_lev = 0.08660444773 Minimum estdt over all levels = 0.08660444773 Call to estdt at end of istep_divu_iter = 1 gives dt = 0.08660444773 Multiplying dt by init_shrink; dt = 0.008660444773 Ignoring this new dt since it's larger than the previous dt = 6.08983586e-05 Writing plotfile RT_pltafter_DivuIter after final DivuIter Time to write plotfile: 0.060340722 Doing initial pressure iteration #1 Timestep 0 starts with TIME = 0 DT = 6.08983586e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 0.002421164472 MLMG: Initial residual (resid0) = 0.002421164472 MLMG: Final Iter. 9 resid, resid/bnorm = 1.751907778e-13, 7.235806565e-11 MLMG: Timers: Solve = 0.076402514 Iter = 0.074261083 Bottom = 0.020035068 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 0.002421205691 MLMG: Initial residual (resid0) = 2.151449932e-06 MLMG: Final Iter. 7 resid, resid/bnorm = 9.92790858e-14, 4.100398663e-11 MLMG: Timers: Solve = 0.058206989 Iter = 0.056273185 Bottom = 0.014389808 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 58.12657035 MLMG: Initial residual (resid0) = 58.12657035 MLMG: Final Iter. 8 resid, resid/bnorm = 6.579625733e-12, 1.131948039e-13 MLMG: Timers: Solve = 0.275890821 Iter = 0.270827382 Bottom = 0.002339266 Done calling nodal solver Timestep 0 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05 Timing summary: Advection :0.087869557 seconds MAC Proj :0.144288216 seconds Nodal Proj :0.293862515 seconds Reactions :0.007221761 seconds Misc :0.007761145 seconds Base State :0.008219578 seconds Time to advance time step: 0.541120076 Writing plotfile 0 after all initialization Time to write plotfile: 0.062864359 Calling Evolve() Timestep 1 starts with TIME = 0 DT = 6.08983586e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 2.394238647e-05 MLMG: Initial residual (resid0) = 2.394238647e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 3.181930473e-16, 1.3289947e-11 MLMG: Timers: Solve = 0.078452937 Iter = 0.075826686 Bottom = 0.02061374 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 2.394218844e-05 MLMG: Initial residual (resid0) = 1.928423544e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 6.036515824e-16, 2.521288244e-11 MLMG: Timers: Solve = 0.074941879 Iter = 0.072959116 Bottom = 0.017870878 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003539812449 MLMG: Initial residual (resid0) = 0.003539812449 MLMG: Final Iter. 8 resid, resid/bnorm = 4.105873627e-16, 1.15991276e-13 MLMG: Timers: Solve = 0.272994045 Iter = 0.267043016 Bottom = 0.002216112 Done calling nodal solver Timestep 1 ends with TIME = 6.08983586e-05 DT = 6.08983586e-05 Timing summary: Advection :0.094511777 seconds MAC Proj :0.162580082 seconds Nodal Proj :0.291667069 seconds Reactions :0.007319907 seconds Misc :0.007599683 seconds Base State :0.012581155 seconds Time to advance time step: 0.563786867 Call to estdt for level 0 gives dt_lev = 0.3128878797 Minimum estdt over all levels = 0.3128878797 Call to estdt at beginning of step 2 gives dt =0.3128878797 dt_growth factor limits the new dt = 6.698819446e-05 Timestep 2 starts with TIME = 6.08983586e-05 DT = 6.698819446e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.050043586e-05 MLMG: Initial residual (resid0) = 3.050043586e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 2.488971468e-15, 8.160445574e-11 MLMG: Timers: Solve = 0.083749183 Iter = 0.080902313 Bottom = 0.02000109 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.058944204e-05 MLMG: Initial residual (resid0) = 3.199013704e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 8.243875214e-16, 2.695006729e-11 MLMG: Timers: Solve = 0.076122608 Iter = 0.074141859 Bottom = 0.019282202 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.003894011945 MLMG: Initial residual (resid0) = 0.003894011945 MLMG: Final Iter. 8 resid, resid/bnorm = 4.317293051e-16, 1.108700515e-13 MLMG: Timers: Solve = 0.272623798 Iter = 0.267349929 Bottom = 0.002217447 Done calling nodal solver Timestep 2 ends with TIME = 0.0001278865531 DT = 6.698819446e-05 Timing summary: Advection :0.083466356 seconds MAC Proj :0.168894148 seconds Nodal Proj :0.290622203 seconds Reactions :0.008517751 seconds Misc :0.006684297 seconds Base State :0.011115116 seconds Time to advance time step: 0.558302961 Call to estdt for level 0 gives dt_lev = 0.3130334216 Minimum estdt over all levels = 0.3130334216 Call to estdt at beginning of step 3 gives dt =0.3130334216 dt_growth factor limits the new dt = 7.368701391e-05 Timestep 3 starts with TIME = 0.0001278865531 DT = 7.368701391e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 3.95508693e-05 MLMG: Initial residual (resid0) = 3.95508693e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 3.693512485e-15, 9.338637937e-11 MLMG: Timers: Solve = 0.084129904 Iter = 0.081307223 Bottom = 0.020346256 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 3.959533953e-05 MLMG: Initial residual (resid0) = 1.255233814e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 1.018167484e-15, 2.571432638e-11 MLMG: Timers: Solve = 0.076325034 Iter = 0.074349479 Bottom = 0.019462694 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.004283412916 MLMG: Initial residual (resid0) = 0.004283412916 MLMG: Final Iter. 8 resid, resid/bnorm = 5.063224146e-16, 1.182053714e-13 MLMG: Timers: Solve = 0.272518606 Iter = 0.267714544 Bottom = 0.002232007 Done calling nodal solver Timestep 3 ends with TIME = 0.000201573567 DT = 7.368701391e-05 Timing summary: Advection :0.089920779 seconds MAC Proj :0.169433236 seconds Nodal Proj :0.293617077 seconds Reactions :0.007128917 seconds Misc :0.008487337 seconds Base State :0.009256267 seconds Time to advance time step: 0.568696133 Call to estdt for level 0 gives dt_lev = 0.3130332415 Minimum estdt over all levels = 0.3130332415 Call to estdt at beginning of step 4 gives dt =0.3130332415 dt_growth factor limits the new dt = 8.10557153e-05 Timestep 4 starts with TIME = 0.000201573567 DT = 8.10557153e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 5.584767504e-05 MLMG: Initial residual (resid0) = 5.584767504e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 4.642761411e-15, 8.313258175e-11 MLMG: Timers: Solve = 0.083856776 Iter = 0.081040787 Bottom = 0.020100456 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 5.589659305e-05 MLMG: Initial residual (resid0) = 8.595125776e-06 MLMG: Final Iter. 9 resid, resid/bnorm = 1.590778697e-15, 2.845931407e-11 MLMG: Timers: Solve = 0.076329295 Iter = 0.074347227 Bottom = 0.019529571 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.00471175454 MLMG: Initial residual (resid0) = 0.00471175454 MLMG: Final Iter. 8 resid, resid/bnorm = 5.516420654e-16, 1.170778445e-13 MLMG: Timers: Solve = 0.272688546 Iter = 0.266733722 Bottom = 0.002208343 Done calling nodal solver Timestep 4 ends with TIME = 0.0002826292823 DT = 8.10557153e-05 Timing summary: Advection :0.093356487 seconds MAC Proj :0.169280736 seconds Nodal Proj :0.291602851 seconds Reactions :0.008701719 seconds Misc :0.008934866 seconds Base State :0.011936774 seconds Time to advance time step: 0.571983538 Call to estdt for level 0 gives dt_lev = 0.3130323437 Minimum estdt over all levels = 0.3130323437 Call to estdt at beginning of step 5 gives dt =0.3130323437 dt_growth factor limits the new dt = 8.916128683e-05 Timestep 5 starts with TIME = 0.0002826292823 DT = 8.916128683e-05 Cell Count: Level 0, 131072 cells <<< STEP 1 : react state >>> <<< STEP 2 : make w0 >>> <<< STEP 3 : create MAC velocities >>> MLMG: Initial rhs = 7.37743008e-05 MLMG: Initial residual (resid0) = 7.37743008e-05 MLMG: Final Iter. 10 resid, resid/bnorm = 5.790473161e-15, 7.8489028e-11 MLMG: Timers: Solve = 0.083751622 Iter = 0.080964843 Bottom = 0.019906631 <<< STEP 4 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 4a: thermal conduct >>> <<< STEP 5 : react state >>> <<< STEP 6 : make new S and new w0 >>> <<< STEP 7 : create MAC velocities >>> MLMG: Initial rhs = 7.382811066e-05 MLMG: Initial residual (resid0) = 1.227044436e-05 MLMG: Final Iter. 9 resid, resid/bnorm = 2.004415378e-15, 2.714975855e-11 MLMG: Timers: Solve = 0.076720931 Iter = 0.074569521 Bottom = 0.019563523 <<< STEP 8 : advect base >>> : density_advance >>> : tracer_advance >>> : enthalpy_advance >>> <<< STEP 8a: thermal conduct >>> <<< STEP 9 : react state >>> <<< STEP 10: make new S >>> <<< STEP 11: update and project new velocity >>> Calling nodal solver MLMG: Initial rhs = 0.005182930403 MLMG: Initial residual (resid0) = 0.005182930403 MLMG: Final Iter. 8 resid, resid/bnorm = 5.824334071e-16, 1.123753093e-13 MLMG: Timers: Solve = 0.272812293 Iter = 0.268026536 Bottom = 0.002456498 Done calling nodal solver Timestep 5 ends with TIME = 0.0003717905691 DT = 8.916128683e-05 Timing summary: Advection :0.087079145 seconds MAC Proj :0.169693264 seconds Nodal Proj :0.291458657 seconds Reactions :0.00728056 seconds Misc :0.007936254 seconds Base State :0.010827718 seconds Time to advance time step: 0.563559837 Writing plotfile 5 Time to write plotfile: 0.063949719 Total Time: 3.941461455 Unused ParmParse Variables: [TOP]::maestro.v(nvals = 1) :: [1] [TOP]::amr.ref_ratio(nvals = 4) :: [2, 2, 2, 2] [TOP]::amr.check_file(nvals = 1) :: [RT_chk] [TOP]::amr.checkpoint_files_output(nvals = 1) :: [0] Total GPU global memory (MB): 12066 Free GPU global memory (MB): 10389 [The Arena] space allocated (MB): 9049 [The Arena] space used (MB): 0 [The Device Arena] space allocated (MB): 8 [The Device Arena] space used (MB): 0 [The Managed Arena] space allocated (MB): 8 [The Managed Arena] space used (MB): 0 [The Pinned Arena] space allocated (MB): 8 [The Pinned Arena] space used (MB): 0 AMReX (20.05-35-gc11bbc9bec27) finalized